HL_7BL3_012

3D structure

PDB id

7BL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

7BL3|1|A|G|386, 7BL3|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL3_012 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.3019

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7BL3|1|A|G|381
7BL3|1|A|A|382
7BL3|1|A|C|383
7BL3|1|A|A|384
7BL3|1|A|C|385
7BL3|1|A|G|386
7BL3|1|A|U|387
7BL3|1|A|G|388
7BL3|1|A|G|389
7BL3|1|A|U|390
7BL3|1|A|A|391
7BL3|1|A|U|392
7BL3|1|A|C|393

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28