HL_7BL3_036

3D structure

PDB id

7BL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7BL3|1|A|A|1453, 7BL3|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL3_036 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.1741

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7BL3|1|A|C|1451
7BL3|1|A|G|1452
7BL3|1|A|A|1453
7BL3|1|A|C|1454
7BL3|1|A|G|1455
7BL3|1|A|G|1456
7BL3|1|A|U|1457
7BL3|1|A|U|1458
7BL3|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17