HL_7BL4_011

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

7BL4|1|A|G|329, 7BL4|1|A|A|330, 7BL4|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL4_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1274

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7BL4|1|A|G|327
7BL4|1|A|U|328
7BL4|1|A|G|329
7BL4|1|A|A|330
7BL4|1|A|C|331
7BL4|1|A|A|332
7BL4|1|A|G|333
7BL4|1|A|C|334
7BL4|1|A|C|335

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24