HL_7BL4_048

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

7BL4|1|A|A|1913, 7BL4|1|A|C|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL4_048 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2756

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7BL4|1|A|G|1910
7BL4|1|A|U|1911
7BL4|1|A|A|1912
7BL4|1|A|A|1913
7BL4|1|A|C|1914
7BL4|1|A|U|1915
7BL4|1|A|A|1916
7BL4|1|A|U|1917
7BL4|1|A|A|1918
7BL4|1|A|A|1919
7BL4|1|A|C|1920

Current chains

Chain A

23S ribosomal RNA

Nearby chains