HL_7BL4_061

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

7BL4|1|A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL4_061 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1636

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

7BL4|1|A|U|2528
7BL4|1|A|G|2529
7BL4|1|A|A|2530
7BL4|1|A|A|2531
7BL4|1|A|G|2532
7BL4|1|A|U|2533
7BL4|1|A|A|2534
7BL4|1|A|G|2535

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

GTPase ObgE/CgtA

Chain G

50S ribosomal protein L6

Chain g

50S ribosomal protein L36