HL_7BOG_008

3D structure

PDB id

7BOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state E (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BOG_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.07

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7BOG|1|A|A|320
7BOG|1|A|A|321
7BOG|1|A|C|322
7BOG|1|A|U|323
7BOG|1|A|G|324
7BOG|1|A|A|325
7BOG|1|A|G|326
7BOG|1|A|A|327
7BOG|1|A|C|328
7BOG|1|A|A|329
7BOG|1|A|C|330
7BOG|1|A|G|331
7BOG|1|A|G|332
7BOG|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20