HL_7BOI_006

3D structure

PDB id

7BOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

7BOI|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BOI_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.087

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7BOI|1|A|G|259
7BOI|1|A|G|260
7BOI|1|A|U|261
7BOI|1|A|A|262
7BOI|1|A|A|263
7BOI|1|A|C|264
7BOI|1|A|G|265
7BOI|1|A|G|266
7BOI|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20