HL_7BOI_008

3D structure

PDB id

7BOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BOI_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0814

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7BOI|1|A|A|320
7BOI|1|A|A|321
7BOI|1|A|C|322
7BOI|1|A|U|323
7BOI|1|A|G|324
7BOI|1|A|A|325
7BOI|1|A|G|326
7BOI|1|A|A|327
7BOI|1|A|C|328
7BOI|1|A|A|329
7BOI|1|A|C|330
7BOI|1|A|G|331
7BOI|1|A|G|332
7BOI|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20