HL_7BT6_014

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

7BT6|1|1|U|643, 7BT6|1|1|A|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BT6_014 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.2378

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

7BT6|1|1|U|640
7BT6|1|1|C|641
7BT6|1|1|U|642
7BT6|1|1|U|643
7BT6|1|1|G|644
7BT6|1|1|A|645
7BT6|1|1|A|646
7BT6|1|1|A|647
7BT6|1|1|C|648
7BT6|1|1|A|649

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain e

60S ribosomal protein L32