RNA 3D Hub //

7BT6 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7BT6_0011/1/39:44No text annotation
HL_7BT6_0021/1/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_7BT6_0031/1/90:96No text annotation
geometric
HL_7A0S_007
HL_53890.2
HL_7BT6_0041/1/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_7BT6_0051/1/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_7BT6_0061/1/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_7BT6_0071/1/216:224T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_7BT6_0081/1/280:285GNRA variation
geometric
HL_4QK9_001
HL_37824.7
HL_7BT6_0091/1/303:312Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_7BT6_0101/1/357:362GNRA
homologous
HL_8C3A_010
NA
HL_7BT6_0111/1/382:387GNRA
homologous
HL_8C3A_011
NA
HL_7BT6_0121/1/543:548No text annotation
geometric
HL_7RQB_011
NA
HL_7BT6_0131/1/599:604GNRA
homologous
HL_5TBW_013
NA
HL_7BT6_0141/1/640:649No text annotation
geometric
HL_7VTI_001
HL_48417.5
HL_7BT6_0731/1/687:693No text annotation
geometric
HL_5J7L_151
HL_80922.2
HL_7BT6_0161/1/707:712GNRA
homologous
HL_8C3A_016
NA
HL_7BT6_0171/1/732:737GNRA
homologous
HL_5TBW_017
NA
HL_7BT6_0181/1/763:768No text annotation
geometric
HL_5TBW_018
NA
HL_7BT6_0191/1/844:849GNRA
homologous
HL_5TBW_019
NA
HL_7BT6_0201/1/875:886Externally structured
geometric
HL_8C3A_022
NA
HL_7BT6_0211/1/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_7BT6_0221/1/958:963Ribsomal LSU H95
geometric
HL_5J7L_198
HL_65794.5
HL_7BT6_0251/1/1126:1132Other HL
geometric
HL_4V9F_039
HL_77436.5
HL_7BT6_0261/1/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_7BT6_0271/1/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_7BT6_0281/1/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_7BT6_0291/1/1347:1357No text annotation
homologous
HL_5TBW_029
NA
HL_7BT6_0301/1/1403:1408GNRA
homologous
HL_5TBW_030
NA
HL_7BT6_0311/1/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_7BT6_0321/1/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_7BT6_0331/1/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_7BT6_0341/1/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_7BT6_0351/1/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_7BT6_0361/1/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_7BT6_0371/1/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_7BT6_0381/1/1759:1766No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_7BT6_0391/1/1792:1796No text annotation
homologous
HL_8C3A_040
NA
HL_7BT6_0401/1/1844:1851No text annotation
homologous
HL_5TBW_041
NA
HL_7BT6_0411/1/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_7BT6_0421/1/1923:1928UNCG
geometric
HL_5TBW_043
NA
HL_7BT6_0441/1/2110:2114No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_7BT6_0451/1/2135:2145No text annotation
homologous
HL_5TBW_046
NA
HL_7BT6_0461/1/2163:2171No text annotation
geometric
HL_5TBW_006
NA
HL_7BT6_0471/1/2220:2225GNRA
homologous
HL_5TBW_048
NA
HL_7BT6_0751/1/2253:2263No text annotation
HL_7BT6_0521/1/2633:2645No text annotation
homologous
HL_8C3A_056
NA
HL_7BT6_0531/1/2673:2681No text annotation
homologous
HL_5TBW_056
NA
HL_7BT6_0541/1/2723:2733No text annotation
HL_7BT6_0551/1/2744:2749GNRA
homologous
HL_8C3A_060
NA
HL_7BT6_0561/1/2776:2784Pseudoknot geometry
homologous
HL_5TBW_060
NA
HL_7BT6_0571/1/2840:2848No text annotation
HL_7BT6_0581/1/2897:2904No text annotation
homologous
HL_5TBW_062
NA
HL_7BT6_0591/1/2920:2926No text annotation
geometric
HL_6U8D_003
HL_32346.4
HL_7BT6_0601/1/2963:2968GNRA
homologous
HL_5TBW_064
NA
HL_7BT6_0611/1/3025:3030GNRA
homologous
HL_5TBW_065
NA
HL_7BT6_0621/1/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7BT6_0631/1/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_7BT6_0641/1/3194:3197Mini UNCG
geometric
HL_4V88_192
NA
HL_7BT6_0651/1/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_7BT6_0661/1/3303:3311No text annotation
homologous
HL_5TBW_070
NA
HL_7BT6_0671/1/3350:3353Mini UNCG
homologous
HL_8C3A_072
NA
HL_7BT6_0771/2/47:56No text annotation
homologous
HL_8P9A_186
HL_93438.2
HL_7BT6_0681/2/69:89No text annotation
homologous
HL_8C3A_230
NA
HL_7BT6_0691/2/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_7BT6_0701/2/124:129No text annotation
homologous
HL_5TBW_076
NA
HL_7BT6_0781/3/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_7BT6_0711/3/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_7BT6_0721/3/80:100Externally structured
geometric
HL_8C3A_022
NA

Problematic loops

#loop idProblemSequence
HL_7BT6_015No text annotation
HL_7BT6_023No text annotation
HL_7BT6_024No text annotation
HL_7BT6_074No text annotation
HL_7BT6_043No text annotation
HL_7BT6_048No text annotation
HL_7BT6_049No text annotation
HL_7BT6_050No text annotation
HL_7BT6_051No text annotation
HL_7BT6_076tRNA anticodon loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7BT6_0011/1/6:7,
1/2/150:153		Minor groove platform
geometric
IL_5ML7_009
IL_51454.3
IL_7BT6_0021/1/7:10,
1/2/148:150		Decoding loop with one bulged A
geometric
IL_3LOA_003
IL_08770.1
IL_7BT6_1291/1/13:15,
1/2/144:145		Single bulged U
homologous
IL_8P9A_232
IL_89505.4
IL_7BT6_0041/1/27:28,
1/1/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_7BT6_0051/1/31:38,
1/1/45:53		tSH-tHW-tHH-tHS
homologous
IL_5TBW_005
NA
IL_7BT6_0061/1/82:89,
1/1/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_7BT6_0071/1/123:124,
1/1/144:149		No text annotation
homologous
IL_8C3A_007
NA
IL_7BT6_0081/1/125:127,
1/1/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_7BT6_0091/1/162:165,
1/1/257:260		No text annotation
IL_7BT6_0101/1/169:171,
1/1/247:253		No text annotation
IL_7BT6_0111/1/177:178,
1/1/238:241		Major groove platform
geometric
IL_7A0S_073
IL_48076.6
IL_7BT6_0121/1/189:191,
1/1/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_7BT6_0131/1/272:274,
1/1/291:293		Isolated non-canonical cWW pair
geometric
IL_5MWI_004
IL_87907.2
IL_7BT6_0141/1/278:280,
1/1/285:287		Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_07785.1
IL_7BT6_0151/1/337:339,
1/2/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_7BT6_0161/1/376:379,
1/1/390:403		No text annotation
homologous
IL_8C3A_015
NA
IL_7BT6_0171/1/404:410,
1/2/13:19		Triple sheared with non-canonical cWW
geometric
IL_5TBW_015
NA
IL_7BT6_0181/1/429:431,
1/1/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_7BT6_0201/1/512:513,
1/1/577:579		Single bulged A
homologous
IL_5TBW_018
NA
IL_7BT6_0211/1/517:525,
1/1/567:573		No text annotation
homologous
IL_5TBW_019
NA
IL_7BT6_0221/1/531:538,
1/1/553:561		No text annotation
homologous
IL_5TBW_020
NA
IL_7BT6_1311/1/668:670,
1/1/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_7BT6_0241/1/680:684,
1/1/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_7BT6_0251/1/725:728,
1/1/741:745		No text annotation
homologous
IL_8C3A_025
NA
IL_7BT6_0261/1/752:753,
1/1/779:781		Single bulged A
homologous
IL_5TBW_024
NA
IL_7BT6_0271/1/755:757,
1/1/774:777		No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_7BT6_0281/1/758:763,
1/1/768:773		No text annotation
homologous
IL_8C3A_028
NA
IL_7BT6_0291/1/803:805,
1/1/938:940		No text annotation
geometric
IL_7RQB_017
NA
IL_7BT6_1321/1/803:809,
1/1/931:940		No text annotation
IL_7BT6_0301/1/805:809,
1/1/931:938		No text annotation
IL_7BT6_0311/1/833:834,
1/1/859:861		Single bulged G
geometric
IL_5TBW_029
NA
IL_7BT6_0321/1/834:838,
1/1/855:859		Triple sheared
homologous
IL_8C3A_033
NA
IL_7BT6_0331/1/870:872,
1/1/888:889		Minor groove platform
geometric
IL_8VTW_080
NA
IL_7BT6_1331/1/870:875,
1/1/886:889		No text annotation
IL_7BT6_0341/1/872:875,
1/1/886:888		Isolated non-canonical cWW with bulges
geometric
IL_4V9F_097
IL_07785.1
IL_7BT6_0351/1/907:909,
1/1/919:923		Multiple bulged bases
geometric
IL_7RQB_023
NA
IL_7BT6_0361/1/954:956,
1/1/965:967		Isolated non-canonical cWW pair
homologous
IL_5TBW_034
NA
IL_7BT6_0371/1/969:970,
1/1/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_7BT6_1341/1/969:981,
1/1/1102:1113		No text annotation
IL_7BT6_0381/1/983:985,
1/1/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_7BT6_0391/1/990:1001,
1/1/1050:1059		No text annotation
IL_7BT6_0401/1/1069:1072,
1/1/1086:1089		No text annotation
IL_7BT6_0411/1/1120:1122,
1/1/1136:1138		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_7BT6_0421/1/1167:1171,
1/1/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_7BT6_1351/1/1173:1180,
1/1/1325:1326		SSU/LSU pseudoknot
homologous
IL_8P9A_277
IL_41203.4
IL_7BT6_0441/1/1180:1182,
1/1/1324:1325		Single bulged U
geometric
IL_7A0S_035
IL_89505.4
IL_7BT6_0451/1/1186:1194,
1/1/1314:1320		No text annotation
IL_7BT6_0461/1/1194:1206,
1/1/1298:1314		No text annotation
IL_7BT6_0471/1/1207:1209,
1/1/1296:1297		Single bulged U
homologous
IL_5TBW_053
NA
IL_7BT6_0481/1/1218:1226,
1/1/1283:1287		Kink-turn
homologous
IL_8C3A_057
NA
IL_7BT6_1361/1/1232:1238,
1/1/1250:1256		No text annotation
IL_7BT6_0491/1/1234:1238,
1/1/1250:1254		No text annotation
homologous
IL_8C3A_058
NA
IL_7BT6_0501/1/1262:1266,
1/1/1275:1277		Major groove platform with extra cWW
homologous
IL_5TBW_056
NA
IL_7BT6_0511/1/1376:1378,
1/1/1428:1431		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_7BT6_0521/1/1385:1387,
1/1/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_7BT6_0531/1/1388:1395,
1/1/1415:1419		Kink-turn
homologous
IL_5TBW_059
NA
IL_7BT6_0541/1/1398:1400,
1/1/1411:1412		Single bulged A
homologous
IL_5TBW_060
NA
IL_7BT6_0551/1/1444:1450,
1/1/2354:2359		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_7BT6_1371/1/1501:1505,
1/1/1513:1515		C-loop
homologous
IL_8C3A_482
NA
IL_7BT6_0571/1/1532:1536,
1/1/1585:1590		UAA/GAN
homologous
IL_5TBW_063
NA
IL_7BT6_0591/1/1618:1621,
1/1/1824:1826		Other IL
homologous
IL_5TBW_064
NA
IL_7BT6_0601/1/1623:1624,
1/1/1819:1822		Multiple bulged bases
geometric
IL_4YAZ_007
IL_82107.4
IL_7BT6_0611/1/1627:1631,
1/1/1811:1816		No text annotation
homologous
IL_8C3A_072
NA
IL_7BT6_0621/1/1645:1649,
1/1/1806:1810		Triple sheared
homologous
IL_8C3A_073
NA
IL_7BT6_0631/1/1661:1663,
1/1/1786:1788		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_7BT6_0641/1/1669:1670,
1/1/1778:1780		Single bulged C
homologous
IL_8C3A_075
NA
IL_7BT6_0651/1/1670:1671,
1/1/1776:1778		Single stack bend
geometric
IL_5TBW_070
NA
IL_7BT6_0661/1/1694:1698,
1/1/1747:1752		No text annotation
homologous
IL_8C3A_077
NA
IL_7BT6_0671/1/1702:1707,
1/1/1737:1743		No text annotation
homologous
IL_5TBW_072
NA
IL_7BT6_0681/1/1711:1717,
1/1/1727:1733		Kink-turn
homologous
IL_5TBW_073
NA
IL_7BT6_0691/1/1883:1889,
1/1/2346:2349		No text annotation
homologous
IL_8C3A_080
NA
IL_7BT6_0701/1/1895:1897,
1/1/2338:2340		No text annotation
homologous
IL_8C3A_081
NA
IL_7BT6_0711/1/1898:1901,
1/1/2336:2337		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_7BT6_1391/1/1898:1906,
1/1/2333:2337		No text annotation
homologous
IL_8P9A_305
IL_22854.4
IL_7BT6_0721/1/1901:1906,
1/1/2333:2336		Intercalated tWH
homologous
IL_5TBW_077
NA
IL_7BT6_0731/1/1918:1923,
1/1/1928:1934		No text annotation
homologous
IL_8C3A_084
NA
IL_7BT6_0741/1/1940:1942,
1/1/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_7BT6_0751/1/1947:1948,
1/1/2098:2101		No text annotation
homologous
IL_8C3A_086
NA
IL_7BT6_0761/1/2128:2129,
1/1/2323:2325		Single bulged A
homologous
IL_8C3A_087
NA
IL_7BT6_0771/1/2156:2161,
1/1/2173:2180		Kink-turn related
homologous
IL_5TBW_083
NA
IL_7BT6_1411/1/2203:2217,
1/1/2228:2239		No text annotation
IL_7BT6_0781/1/2391:2394,
1/1/2986:2988		No text annotation
homologous
IL_8C3A_096
NA
IL_7BT6_0791/1/2409:2414,
1/1/2806:2812		No text annotation
IL_7BT6_0801/1/2420:2422,
1/1/2608:2610		Isolated non-canonical cWW pair
geometric
IL_3MEI_002
IL_87907.2
IL_7BT6_0811/1/2435:2441,
1/1/2505:2512		No text annotation
IL_7BT6_0821/1/2621:2623,
1/1/2755:2757		Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_87907.2
IL_7BT6_0831/1/2664:2668,
1/1/2686:2706		No text annotation
IL_7BT6_0841/1/2718:2721,
1/1/2735:2738		No text annotation
IL_7BT6_1431/1/2718:2723,
1/1/2733:2738		No text annotation
IL_7BT6_0851/1/2721:2723,
1/1/2733:2735		No text annotation
geometric
IL_1N33_070
NA
IL_7BT6_0861/1/2741:2742,
1/1/2751:2753		Single stack bend
geometric
IL_5J7L_269
IL_26793.1
IL_7BT6_0871/1/2761:2765,
1/1/2794:2798		No text annotation
IL_7BT6_0881/1/2765:2766,
1/1/2792:2794		No text annotation
IL_7BT6_0891/1/2769:2773,
1/1/2787:2789		Other IL
geometric
IL_5M0H_001
NA
IL_7BT6_0901/1/2835:2839,
1/1/2849:2853		No text annotation
homologous
IL_8C3A_114
NA
IL_7BT6_0921/1/2889:2891,
1/1/2912:2914		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_7BT6_1441/1/2889:2892,
1/1/2909:2914		No text annotation
homologous
IL_8P9A_338
IL_07469.2
IL_7BT6_0931/1/2891:2892,
1/1/2909:2912		Major groove platform with intercalation
homologous
IL_5TBW_111
NA
IL_7BT6_0941/1/2918:2920,
1/1/2926:2928		Isolated cWH basepair
geometric
IL_5F5F_003
IL_10167.6
IL_7BT6_0951/1/2959:2961,
1/1/2970:2973		No text annotation
IL_7BT6_0961/1/3004:3007,
1/1/3139:3144		Double sheared
homologous
IL_5TBW_114
NA
IL_7BT6_0971/1/3012:3014,
1/1/3040:3042		Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_7BT6_0981/1/3018:3025,
1/1/3030:3036		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_7BT6_0991/1/3047:3051,
1/1/3091:3094		Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_7BT6_1001/1/3054:3059,
1/1/3084:3088		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_7BT6_1011/1/3063:3064,
1/1/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_7BT6_1021/1/3103:3107,
1/1/3127:3131		UAA/GAN
homologous
IL_8C3A_129
NA
IL_7BT6_1031/1/3164:3166,
1/1/3284:3286		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_7BT6_1041/1/3177:3179,
1/1/3210:3211		Single bulged A
geometric
IL_5TBW_123
NA
IL_7BT6_1051/1/3179:3188,
1/1/3204:3210		No text annotation
homologous
IL_5TBW_124
NA
IL_7BT6_1061/1/3193:3194,
1/1/3197:3199		Single bulged U
homologous
IL_5TBW_125
NA
IL_7BT6_1071/1/3225:3229,
1/1/3258:3260		No text annotation
homologous
IL_5TBW_126
NA
IL_7BT6_1081/1/3233:3235,
1/1/3252:3254		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_7BT6_1091/1/3235:3238,
1/1/3249:3252		Tandem non-canonical cWW pairs
homologous
IL_5TBW_128
NA
IL_7BT6_1101/1/3300:3303,
1/1/3311:3314		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_7BT6_1111/1/3318:3320,
1/1/3387:3388		Single bulged U
homologous
IL_8C3A_136
NA
IL_7BT6_1121/1/3324:3325,
1/1/3381:3383		Single bulged U
homologous
IL_5TBW_131
NA
IL_7BT6_1131/1/3328:3330,
1/1/3373:3378		No text annotation
homologous
IL_8C3A_138
NA
IL_7BT6_1141/1/3332:3337,
1/1/3367:3371		No text annotation
homologous
IL_5TBW_133
NA
IL_7BT6_1151/1/3340:3342,
1/1/3363:3364		Single bulged U
geometric
IL_4V9F_013
IL_89505.4
IL_7BT6_1161/1/3342:3345,
1/1/3360:3363		Double sheared; A in syn
geometric
IL_5TBW_135
NA
IL_7BT6_1171/1/3349:3350,
1/1/3353:3356		Multiple bulged bases
geometric
IL_5TBW_136
NA
IL_7BT6_1181/2/44:64,
1/2/96:100		No text annotation
geometric
IL_5TBW_144
NA
IL_7BT6_1191/2/64:66,
1/2/93:96		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_7BT6_1201/2/68:69,
1/2/89:91		Single bulged U
homologous
IL_5TBW_146
NA
IL_7BT6_1211/3/15:16,
1/3/63:65		Single bulged A
homologous
IL_5TBW_372
NA
IL_7BT6_1221/3/21:27,
1/3/54:58		No text annotation
IL_7BT6_1231/3/27:28,
1/3/52:54		Single stack bend
geometric
IL_5TBW_070
NA
IL_7BT6_1471/3/27:30,
1/3/47:54		No text annotation
IL_7BT6_1241/3/28:29,
1/3/49:52		Minor groove platform
geometric
IL_5TBW_374
NA
IL_7BT6_1251/3/29:30,
1/3/47:49		Single stack bend
homologous
IL_5TBW_375
NA
IL_7BT6_1261/3/32:36,
1/3/41:45		Symmetric double minor groove platform
homologous
IL_5TBW_376
NA
IL_7BT6_1271/3/72:80,
1/3/100:106		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA

Problematic loops

#loop idProblemSequence
IL_7BT6_128Tandem non-canonical cWW pairs
IL_7BT6_003Isolated non-canonical cWW pair
IL_7BT6_019No text annotation
IL_7BT6_130No text annotation
IL_7BT6_023Tandem non-canonical cWW pairs
IL_7BT6_043No text annotation
IL_7BT6_056No text annotation
IL_7BT6_058No text annotation
IL_7BT6_138No text annotation
IL_7BT6_140Tandem non-canonical cWW pairs
IL_7BT6_142Isolated non-canonical cWW pair
IL_7BT6_091No text annotation
IL_7BT6_145Triple sheared
IL_7BT6_146No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7BT6_0131/1/185:189,
1/1/205:214,
1/1/226:231		No text annotation
homologous
J3_8P9A_044
J3_75408.1
J3_7BT6_0141/1/340:356,
1/1/363:368,
1/2/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_7BT6_0011/1/369:376,
1/1/403:404,
1/2/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_7BT6_0151/1/369:379,
1/1/390:404,
1/2/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_7BT6_0021/1/502:503,
1/1/588:597,
1/1/606:611		No text annotation
homologous
J3_5TBW_003
NA
J3_7BT6_0031/1/814:820,
1/1/905:907,
1/1/923:926		No text annotation
homologous
J3_5TBW_004
NA
J3_7BT6_0041/1/828:831,
1/1/863:867,
1/1/892:897		No text annotation
homologous
J3_5TBW_005
NA
J3_7BT6_0181/1/986:987,
1/1/1062:1067,
1/1/1091:1098		No text annotation
geometric
J3_5TBW_063
NA
J3_7BT6_0051/1/1230:1232,
1/1/1256:1262,
1/1/1277:1279		No text annotation
homologous
J3_5TBW_007
NA
J3_7BT6_0191/1/1230:1232,
1/1/1256:1266,
1/1/1275:1279		No text annotation
J3_7BT6_0201/1/1230:1238,
1/1/1250:1266,
1/1/1275:1279		No text annotation
J3_7BT6_0061/1/1479:1485,
1/1/1857:1859,
1/1/1871:1874		No text annotation
homologous
J3_8C3A_006
NA
J3_7BT6_0071/1/1488:1491,
1/1/1837:1843,
1/1/1852:1854		No text annotation
homologous
J3_5TBW_009
NA
J3_7BT6_0081/1/1526:1531,
1/1/1591:1595,
1/1/1612:1613		No text annotation
homologous
J3_5TBW_010
NA
J3_7BT6_0211/1/1627:1632,
1/1/1641:1649,
1/1/1806:1816		No text annotation
J3_7BT6_0091/1/1631:1632,
1/1/1641:1645,
1/1/1810:1811		No text annotation
geometric
J3_8C3A_054
NA
J3_7BT6_0221/1/1654:1658,
1/1/1791:1792,
1/1/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_7BT6_0101/1/2886:2889,
1/1/2914:2916,
1/1/2930:2936		No text annotation
homologous
J3_8C3A_011
NA
J3_7BT6_0231/1/3168:3176,
1/1/3212:3220,
1/1/3265:3282		No text annotation
J3_7BT6_0111/1/3298:3300,
1/1/3314:3318,
1/1/3388:3390		No text annotation
J3_7BT6_0241/2/44:45,
1/2/58:64,
1/2/96:100		No text annotation
homologous
J3_8C3A_060
NA
J3_7BT6_0121/3/9:14,
1/3/66:67,
1/3/111:112		No text annotation
homologous
J3_5TBW_045
NA
J4_7BT6_0011/1/185:189,
1/1/205:208,
1/1/212:214,
1/1/226:231		No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_7BT6_0021/1/1451:1457,
1/1/1475:1476,
1/1/1877:1880,
1/1/2352:2353		No text annotation
homologous
J4_8C3A_003
NA
J4_7BT6_0031/1/1492:1496,
1/1/1520:1525,
1/1/1614:1615,
1/1/1829:1836		No text annotation
homologous
J4_8P9A_015
J4_69051.6
J4_7BT6_0041/1/1674:1675,
1/1/1693:1694,
1/1/1752:1753,
1/1/1772:1773		No text annotation
homologous
J4_8C3A_005
NA
J4_7BT6_0051/1/3010:3012,
1/1/3042:3043,
1/1/3098:3100,
1/1/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_65356.1
J5_7BT6_0091/1/20:22,
1/2/35:42,
1/2/102:107,
1/2/115:116,
1/2/137:139		No text annotation
homologous
J5_8CRE_001
J5_01737.2
J5_7BT6_0021/1/112:123,
1/1/149:162,
1/1/260:272,
1/1/293:299,
1/1/316:319		No text annotation
J5_7BT6_0031/1/112:124,
1/1/144:162,
1/1/260:272,
1/1/293:299,
1/1/316:319		No text annotation
J5_7BT6_0041/1/658:663,
1/1/799:802,
1/1/941:944,
1/1/1375:1376,
1/1/1431:1437		No text annotation
homologous
J5_8C3A_002
NA
J5_7BT6_0051/1/675:678,
1/1/702:706,
1/1/713:721,
1/1/749:751,
1/1/782:787		No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_7BT6_0061/1/1906:1914,
1/1/1938:1939,
1/1/2109:2110,
1/1/2114:2122,
1/1/2331:2333		No text annotation
homologous
J5_8P9A_013
J5_62523.6
J5_7BT6_0071/1/2396:2405,
1/1/2816:2832,
1/1/2856:2876,
1/1/2950:2957,
1/1/2975:2984		No text annotation
J5_7BT6_0081/1/2623:2629,
1/1/2649:2658,
1/1/2712:2716,
1/1/2740:2741,
1/1/2753:2755		No text annotation
J6_7BT6_0011/1/22:27,
1/1/58:68,
1/1/75:79,
1/1/106:110,
1/1/321:331,
1/2/32:35		No text annotation
J6_7BT6_0021/1/2130:2134,
1/1/2146:2150,
1/1/2186:2203,
1/1/2239:2252,
1/1/2264:2279,
1/1/2314:2322		No text annotation
J7_7BT6_0021/1/949:954,
1/1/967:968,
1/1/1114:1117,
1/1/1141:1146,
1/1/1157:1161,
1/1/1338:1339,
1/1/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_7BT6_016No text annotation
J3_7BT6_017No text annotation
J3_7BT6_025No text annotation
J5_7BT6_001No text annotation
J7_7BT6_001No text annotation

Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.2308 s