HL_7BT6_022

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BT6_022 not in the Motif Atlas

Geometric match to HL_5J7L_198

Geometric discrepancy: 0.3595

The information below is about HL_5J7L_198

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7BT6|1|1|C|958
7BT6|1|1|C|959
7BT6|1|1|U|960
7BT6|1|1|C|961
7BT6|1|1|A|962
7BT6|1|1|G|963

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain m

Nucleolar GTP-binding protein 2