HL_7BT6_032

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7BT6|1|1|G|1507, 7BT6|1|1|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BT6_032 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1739

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7BT6|1|1|A|1506
7BT6|1|1|G|1507
7BT6|1|1|C|1508
7BT6|1|1|A|1509
7BT6|1|1|G|1510
7BT6|1|1|U|1511
7BT6|1|1|U|1512

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain R

60S ribosomal protein L19-A