HL_7BT6_048
3D structure
- PDB id
- 7BT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- AGUAACUAUGACU
- Length
- 13 nucleotides
- Bulged bases
- 7BT6|1|1|A|2256, 7BT6|1|1|A|2259, 7BT6|1|1|U|2260, 7BT6|1|1|A|2262
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7BT6_048 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.1996
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7BT6|1|1|A|2252
7BT6|1|1|G|2253
7BT6|1|1|U|2254
7BT6|1|1|A|2255
7BT6|1|1|A|2256
7BT6|1|1|C|2257
7BT6|1|1|U|2258
7BT6|1|1|A|2259
7BT6|1|1|U|2260
7BT6|1|1|G|2261
7BT6|1|1|A|2262
7BT6|1|1|C|2263
7BT6|1|1|U|2264
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain v
- Ribosome biogenesis protein RPF2
- Chain w
- Regulator of ribosome biosynthesis
- Chain x
- Ribosome assembly protein 4
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