HL_7BT6_066

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

7BT6|1|1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BT6_066 not in the Motif Atlas

Homologous match to HL_5TBW_070

Geometric discrepancy: 0.1059

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7BT6|1|1|G|3303
7BT6|1|1|U|3304
7BT6|1|1|A|3305
7BT6|1|1|U|3306
7BT6|1|1|A|3307
7BT6|1|1|C|3308
7BT6|1|1|G|3309
7BT6|1|1|A|3310
7BT6|1|1|C|3311

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A