HL_7BT6_070

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

7BT6|1|2|U|125, 7BT6|1|2|U|127, 7BT6|1|2|U|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BT6_070 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.514

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7BT6|1|2|G|124
7BT6|1|2|U|125
7BT6|1|2|A|126
7BT6|1|2|U|127
7BT6|1|2|U|128
7BT6|1|2|C|129

Current chains

Chain 2

RDN5.8-1 rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain X

60S ribosomal protein L25