HL_7BTB_022

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BTB_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.4882

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7BTB|1|1|C|958
7BTB|1|1|C|959
7BTB|1|1|U|960
7BTB|1|1|C|961
7BTB|1|1|A|962
7BTB|1|1|G|963

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain m

Nucleolar GTP-binding protein 2