HL_7BTB_047

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CAGAAAGUG

Length

9 nucleotides

Bulged bases

7BTB|1|1|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BTB_047 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2715

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7BTB|1|1|C|2163
7BTB|1|1|A|2164
7BTB|1|1|G|2165
7BTB|1|1|A|2166
7BTB|1|1|A|2167
7BTB|1|1|A|2168
7BTB|1|1|G|2169
7BTB|1|1|U|2170
7BTB|1|1|G|2171

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain G

60S ribosomal protein L8-A

Chain N

60S ribosomal protein L15-A