HL_7BTB_051

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

ACAUAGU

Length

7 nucleotides

Bulged bases

7BTB|1|1|A|2445, 7BTB|1|1|U|2501, 7BTB|1|1|A|2502

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BTB_051 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3535

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7BTB|1|1|A|2443
7BTB|1|1|C|2444
7BTB|1|1|A|2445
7BTB|1|1|U|2501
7BTB|1|1|A|2502
7BTB|1|1|G|2503
7BTB|1|1|U|2504

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain i

60S ribosomal protein L36-A