HL_7BTB_082

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CUUUGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BTB_082 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.3546

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7BTB|1|6|C|37
7BTB|1|6|U|38
7BTB|1|6|U|39
7BTB|1|6|U|40
7BTB|1|6|G|41
7BTB|1|6|G|42

Current chains

Chain 6

ITS2-1 miscRNA

Nearby chains

Chain K

Proteasome-interacting protein CIC1

Chain o

Ribosome biogenesis protein 15