HL_7BV8_011

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

7BV8|1|A|G|329, 7BV8|1|A|A|330, 7BV8|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BV8_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0917

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7BV8|1|A|G|327
7BV8|1|A|U|328
7BV8|1|A|G|329
7BV8|1|A|A|330
7BV8|1|A|C|331
7BV8|1|A|A|332
7BV8|1|A|G|333
7BV8|1|A|C|334
7BV8|1|A|C|335

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24