HL_7BV8_029

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CGCUUAUGCG

Length

10 nucleotides

Bulged bases

7BV8|1|A|A|1175, 7BV8|1|A|U|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BV8_029 not in the Motif Atlas

Homologous match to HL_5J7L_213

Geometric discrepancy: 0.4532

The information below is about HL_5J7L_213

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90774.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7BV8|1|A|C|1170
7BV8|1|A|G|1171
7BV8|1|A|C|1172
7BV8|1|A|U|1173
7BV8|1|A|U|1174
7BV8|1|A|A|1175
7BV8|1|A|U|1176
7BV8|1|A|G|1177
7BV8|1|A|C|1178
7BV8|1|A|G|1179

Current chains

Chain A

23S rRNA

Nearby chains