HL_7BV8_035

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7BV8|1|A|A|1453, 7BV8|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BV8_035 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.1138

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7BV8|1|A|C|1451
7BV8|1|A|G|1452
7BV8|1|A|A|1453
7BV8|1|A|C|1454
7BV8|1|A|G|1455
7BV8|1|A|G|1456
7BV8|1|A|U|1457
7BV8|1|A|U|1458
7BV8|1|A|G|1459

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17