HL_7BV8_044

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

7BV8|1|A|A|1780, 7BV8|1|A|U|1781, 7BV8|1|A|U|1782, 7BV8|1|A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BV8_044 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.114

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7BV8|1|A|U|1777
7BV8|1|A|U|1778
7BV8|1|A|U|1779
7BV8|1|A|A|1780
7BV8|1|A|U|1781
7BV8|1|A|U|1782
7BV8|1|A|A|1783
7BV8|1|A|A|1784
7BV8|1|A|A|1785
7BV8|1|A|A|1786
7BV8|1|A|A|1787

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain d

50S ribosomal protein L34