HL_7BV8_050

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

UGGACGCCAGUCUG

Length

14 nucleotides

Bulged bases

7BV8|1|A|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BV8_050 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3853

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7BV8|1|A|U|2139
7BV8|1|A|G|2140
7BV8|1|A|G|2141
7BV8|1|A|A|2142
7BV8|1|A|C|2143
7BV8|1|A|G|2144
7BV8|1|A|C|2145
7BV8|1|A|C|2146
7BV8|1|A|A|2147
7BV8|1|A|G|2148
7BV8|1|A|U|2149
7BV8|1|A|C|2150
7BV8|1|A|U|2151
7BV8|1|A|G|2152

Current chains

Chain A

23S rRNA

Nearby chains