HL_7BV8_053

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7BV8|1|A|A|2268, 7BV8|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BV8_053 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0942

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7BV8|1|A|C|2264
7BV8|1|A|U|2265
7BV8|1|A|A|2266
7BV8|1|A|A|2267
7BV8|1|A|A|2268
7BV8|1|A|G|2269
7BV8|1|A|A|2270
7BV8|1|A|G|2271
7BV8|1|A|U|2272
7BV8|1|A|A|2273
7BV8|1|A|A|2274
7BV8|1|A|C|2275
7BV8|1|A|G|2276

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27