HL_7BV8_054

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BV8_054 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.2464

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7BV8|1|A|G|2303
7BV8|1|A|G|2304
7BV8|1|A|U|2305
7BV8|1|A|C|2306
7BV8|1|A|G|2307
7BV8|1|A|G|2308
7BV8|1|A|A|2309
7BV8|1|A|C|2310
7BV8|1|A|A|2311
7BV8|1|A|U|2312
7BV8|1|A|C|2313

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5