HL_7BV8_060

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

7BV8|1|A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BV8_060 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0955

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

7BV8|1|A|U|2528
7BV8|1|A|G|2529
7BV8|1|A|A|2530
7BV8|1|A|A|2531
7BV8|1|A|G|2532
7BV8|1|A|U|2533
7BV8|1|A|A|2534
7BV8|1|A|G|2535

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain f

50S ribosomal protein L36