HL_7BV8_065

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7BV8|1|A|G|2751, 7BV8|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BV8_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1091

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7BV8|1|A|C|2745
7BV8|1|A|U|2746
7BV8|1|A|G|2747
7BV8|1|A|A|2748
7BV8|1|A|A|2749
7BV8|1|A|A|2750
7BV8|1|A|G|2751
7BV8|1|A|C|2752
7BV8|1|A|A|2753
7BV8|1|A|U|2754
7BV8|1|A|C|2755
7BV8|1|A|U|2756
7BV8|1|A|A|2757
7BV8|1|A|A|2758
7BV8|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36