HL_7CHD_012

3D structure

PDB id

7CHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

AtaT complexed with acetyl-methionyl-tRNAfMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.804 Å

Loop

Sequence

G(5MU)(PSU)CAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CHD_012 not in the Motif Atlas

Geometric match to HL_2FMT_006

Geometric discrepancy: 0.1494

The information below is about HL_2FMT_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.5

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

149

Unit IDs

7CHD|1|J|G|53||||2_655
7CHD|1|J|5MU|54||||2_655
7CHD|1|J|PSU|55||||2_655
7CHD|1|J|C|56||||2_655
7CHD|1|J|A|57||||2_655
7CHD|1|J|A|58||||2_655
7CHD|1|J|A|59||||2_655
7CHD|1|J|U|60||||2_655
7CHD|1|J|C|61||||2_655

Current chains

Chain J

RNA (77-MER)

Nearby chains