HL_7CPJ_049

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

7CPJ|1|A|A|1913, 7CPJ|1|A|C|1914, 7CPJ|1|A|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPJ_049 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.1258

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

7CPJ|1|A|G|1910
7CPJ|1|A|PSU|1911
7CPJ|1|A|A|1912
7CPJ|1|A|A|1913
7CPJ|1|A|C|1914
7CPJ|1|A|3TD|1915
7CPJ|1|A|A|1916
7CPJ|1|A|PSU|1917
7CPJ|1|A|A|1918
7CPJ|1|A|A|1919
7CPJ|1|A|C|1920

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

Transfer RNA; tRNA

Chain a

Small subunit ribosomal RNA; SSU rRNA