HL_7CPJ_052

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

7CPJ|1|A|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPJ_052 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2783

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7CPJ|1|A|A|2142
7CPJ|1|A|C|2143
7CPJ|1|A|G|2144
7CPJ|1|A|C|2145
7CPJ|1|A|C|2146
7CPJ|1|A|A|2147
7CPJ|1|A|G|2148
7CPJ|1|A|U|2149

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S11