HL_7CPJ_055

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7CPJ|1|A|A|2268, 7CPJ|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPJ_055 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0827

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7CPJ|1|A|C|2264
7CPJ|1|A|U|2265
7CPJ|1|A|A|2266
7CPJ|1|A|A|2267
7CPJ|1|A|A|2268
7CPJ|1|A|G|2269
7CPJ|1|A|A|2270
7CPJ|1|A|G|2271
7CPJ|1|A|U|2272
7CPJ|1|A|A|2273
7CPJ|1|A|A|2274
7CPJ|1|A|C|2275
7CPJ|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27