HL_7CPJ_105

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

7CPJ|1|A|U|958, 7CPJ|1|A|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPJ_105 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.1416

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7CPJ|1|A|PSU|955
7CPJ|1|A|G|956
7CPJ|1|A|C|957
7CPJ|1|A|U|958
7CPJ|1|A|A|959
7CPJ|1|A|A|960
7CPJ|1|A|C|961
7CPJ|1|A|G|962

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16