HL_7CPU_004

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGCGUCG

Length

7 nucleotides

Bulged bases

7CPU|1|L5|U|135, 7CPU|1|L5|C|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_004 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.3632

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7CPU|1|L5|C|131
7CPU|1|L5|G|132
7CPU|1|L5|C|133
7CPU|1|L5|G|134
7CPU|1|L5|U|135
7CPU|1|L5|C|136
7CPU|1|L5|G|137

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37