Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7CPU_0011/L5/37:44No text annotation
homologous
HL_5TBW_001
NA
HL_7CPU_0021/L5/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_7CPU_0031/L5/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_7CPU_0041/L5/131:137No text annotation
geometric
HL_4WF9_011
HL_75660.6
HL_7CPU_0051/L5/204:211T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_7CPU_0061/L5/222:226No text annotation
homologous
HL_8C3A_006
NA
HL_7CPU_0071/L5/230:238T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_7CPU_0081/L5/288:297No text annotation
homologous
HL_5TBW_008
NA
HL_7CPU_0091/L5/313:322Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_7CPU_0101/L5/367:372GNRA
homologous
HL_8C3A_010
NA
HL_7CPU_0111/L5/392:397GNRA
homologous
HL_8C3A_011
NA
HL_7CPU_1181/L5/1005:1022No text annotation
HL_7CPU_0141/L5/1007:1019No text annotation
HL_7CPU_0151/L5/1132:1141T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_7CPU_1191/L5/1179:1188No text annotation
HL_7CPU_0171/L5/1204:1209GNRA
homologous
HL_8C3A_016
NA
HL_7CPU_0181/L5/1220:1226No text annotation
geometric
HL_5TBW_006
NA
HL_7CPU_0191/L5/1250:1262Externally structured
geometric
HL_8C3A_022
NA
HL_7CPU_0201/L5/1294:1298No text annotation
HL_7CPU_0211/L5/1375:1380GNRA
homologous
HL_5TBW_019
NA
HL_7CPU_0221/L5/1407:1416No text annotation
homologous
HL_5TBW_020
NA
HL_7CPU_0231/L5/1441:1449No text annotation
homologous
HL_5TBW_021
NA
HL_7CPU_0241/L5/1489:1494Externally structured
homologous
HL_8C3A_022
NA
HL_7CPU_0251/L5/1556:1580No text annotation
HL_7CPU_0261/L5/1619:1626No text annotation
geometric
HL_5TBW_024
NA
HL_7CPU_0271/L5/1667:1673GNRA
homologous
HL_8C3A_025
NA
HL_7CPU_0281/L5/1689:1696No text annotation
homologous
HL_8C3A_026
NA
HL_7CPU_0301/L5/2014:2018Mini UNCG
geometric
HL_4V9F_021
HL_90436.1
HL_7CPU_0311/L5/2074:2079GNRA
homologous
HL_8C3A_030
NA
HL_7CPU_0321/L5/2133:2141T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_7CPU_0331/L5/2177:2183Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_7CPU_0341/L5/2215:2220GNRA variation
homologous
HL_5TBW_033
NA
HL_7CPU_0351/L5/2226:2228No text annotation
HL_7CPU_0361/L5/2239:2253No text annotation
HL_7CPU_0371/L5/2280:2289No text annotation
homologous
HL_5TBW_035
NA
HL_7CPU_0381/L5/2315:2323tRNA D-loop
geometric
HL_4V90_032
NA
HL_7CPU_0391/L5/2332:2337GNRA
homologous
HL_8C3A_036
NA
HL_7CPU_0401/L5/2378:2386No text annotation
homologous
HL_8C3A_037
NA
HL_7CPU_0411/L5/2418:2424Other HL
geometric
HL_4V9F_039
HL_67772.1
HL_7CPU_0421/L5/2458:2466No text annotation
geometric
HL_2Y9H_005
HL_51020.1
HL_7CPU_0431/L5/2492:2496No text annotation
homologous
HL_8C3A_040
NA
HL_7CPU_0441/L5/2546:2553No text annotation
homologous
HL_8C3A_041
NA
HL_7CPU_0451/L5/2564:2570GNRA
homologous
HL_5TBW_042
NA
HL_7CPU_0461/L5/2626:2631UNCG
homologous
HL_8C3A_043
NA
HL_7CPU_0481/L5/3271:3275No text annotation
homologous
HL_8C3A_045
NA
HL_7CPU_0491/L5/3296:3306No text annotation
homologous
HL_5TBW_046
NA
HL_7CPU_0501/L5/3325:3331GNRA
homologous
HL_8C3A_047
NA
HL_7CPU_0511/L5/3381:3386GNRA
homologous
HL_8C3A_048
NA
HL_7CPU_0521/L5/3414:3424No text annotation
homologous
HL_8C3A_049
NA
HL_7CPU_0531/L5/3453:3461No text annotation
homologous
HL_8C3A_050
NA
HL_7CPU_0541/L5/3530:3539No text annotation
homologous
HL_8C3A_051
NA
HL_7CPU_0571/L5/3846:3854No text annotation
homologous
HL_8C3A_055
NA
HL_7CPU_0581/L5/3863:3875No text annotation
homologous
HL_8C3A_056
NA
HL_7CPU_0591/L5/3903:3911No text annotation
homologous
HL_8C3A_057
NA
HL_7CPU_0601/L5/3923:3930Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_7CPU_0611/L5/3954:3962No text annotation
homologous
HL_8C3A_059
NA
HL_7CPU_0621/L5/3974:3979GNRA
homologous
HL_8C3A_060
NA
HL_7CPU_0631/L5/4005:4015No text annotation
geometric
HL_4V83_139
NA
HL_7CPU_0641/L5/4070:4078No text annotation
homologous
HL_8C3A_062
NA
HL_7CPU_0651/L5/4127:4134No text annotation
homologous
HL_5TBW_062
NA
HL_7CPU_0661/L5/4150:4156No text annotation
homologous
HL_5TBW_063
NA
HL_7CPU_0671/L5/4193:4198GNRA
homologous
HL_8C3A_065
NA
HL_7CPU_0681/L5/4256:4261GNRA
homologous
HL_8C3A_066
NA
HL_7CPU_0691/L5/4299:4304Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7CPU_0701/L5/4341:4355No text annotation
homologous
HL_8C3A_068
NA
HL_7CPU_0721/L5/4553:4560Mini UNCG
geometric
HL_4TUW_002
HL_12626.1
HL_7CPU_0731/L5/4623:4631No text annotation
homologous
HL_8C3A_071
NA
HL_7CPU_0741/L5/4669:4676No text annotation
geometric
HL_5TBW_006
NA
HL_7CPU_1201/L7/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_7CPU_0751/L7/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_7CPU_0761/L7/86:91GNRA
homologous
HL_5TBW_186
NA
HL_7CPU_0771/L8/47:56No text annotation
geometric
HL_7RQB_001
NA
HL_7CPU_0781/L8/68:90No text annotation
HL_7CPU_0791/L8/107:112No text annotation
homologous
HL_5TBW_075
NA
HL_7CPU_0801/L8/122:128No text annotation
geometric
HL_2ZZM_002
NA
HL_7CPU_0811/S2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_7CPU_0821/S2/69:80No text annotation
HL_7CPU_0831/S2/156:162GNRA related
homologous
HL_4V88_188
NA
HL_7CPU_0841/S2/289:296T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_7CPU_0861/S2/378:388No text annotation
HL_7CPU_0871/S2/417:422No text annotation
geometric
HL_5U3G_001
NA
HL_7CPU_0881/S2/442:453No text annotation
homologous
HL_4V88_195
NA
HL_7CPU_0891/S2/463:468UNCG
homologous
HL_4V88_196
NA
HL_7CPU_0901/S2/499:505No text annotation
homologous
HL_4V88_197
NA
HL_7CPU_0911/S2/536:549No text annotation
HL_7CPU_0921/S2/570:582No text annotation
geometric
HL_4V88_199
NA
HL_7CPU_0931/S2/619:624GNRA variation
homologous
HL_4V88_200
NA
HL_7CPU_1211/S2/821:829No text annotation
homologous
HL_8P9A_206
HL_11974.1
HL_7CPU_0981/S2/958:967No text annotation
homologous
HL_4V88_206
NA
HL_7CPU_0991/S2/995:1000GNRA
homologous
HL_4V88_207
NA
HL_7CPU_1001/S2/1055:1065No text annotation
homologous
HL_4V88_208
NA
HL_7CPU_1011/S2/1114:1121No text annotation
HL_7CPU_1021/S2/1142:1147GNRA
homologous
HL_4V88_210
NA
HL_7CPU_1031/S2/1179:1184GNRA
homologous
HL_4V88_211
NA
HL_7CPU_1041/S2/1246:1255No text annotation
homologous
HL_4V88_212
NA
HL_7CPU_1051/S2/1296:1305Anticodon loop related
homologous
HL_4V88_213
NA
HL_7CPU_1061/S2/1354:1359GNRA
homologous
HL_4V88_214
NA
HL_7CPU_1071/S2/1367:1374No text annotation
homologous
HL_4V88_215
NA
HL_7CPU_1081/S2/1417:1425No text annotation
HL_7CPU_1091/S2/1461:1467GNRA
homologous
HL_4V88_217
NA
HL_7CPU_1101/S2/1566:1571GNRA
homologous
HL_4V88_218
NA
HL_7CPU_1111/S2/1615:1626No text annotation
homologous
HL_4V88_219
NA
HL_7CPU_1121/S2/1659:1667No text annotation
homologous
HL_4V88_220
NA
HL_7CPU_1141/S2/1848:1853GNRA variation
homologous
HL_4V88_222
NA
HL_7CPU_1151/S6/14:22No text annotation
homologous
HL_3WFS_001
NA
HL_7CPU_1161/S6/31:39tRNA anticodon loop
homologous
HL_6UFG_007
NA
HL_7CPU_1171/S6/52:62No text annotation
homologous
HL_4V7M_040
HL_50951.1

Problematic loops

#loop idProblemSequence
HL_7CPU_012No text annotation
HL_7CPU_013No text annotation
HL_7CPU_016No text annotation
HL_7CPU_029No text annotation
HL_7CPU_047No text annotation
HL_7CPU_055No text annotation
HL_7CPU_056No text annotation
HL_7CPU_071No text annotation
HL_7CPU_085No text annotation
HL_7CPU_094No text annotation
HL_7CPU_095No text annotation
HL_7CPU_096No text annotation
HL_7CPU_097No text annotation
HL_7CPU_113Mini UNCG

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7CPU_0011/L5/6:7,
1/L8/149:151
Single bulged C
homologous
IL_8C3A_002
NA
IL_7CPU_0021/L5/12:14,
1/L8/143:144
Single bulged U
homologous
IL_8C3A_003
NA
IL_7CPU_0031/L5/16:18,
1/L8/139:141
Isolated non-canonical cWW pair
geometric
IL_1Y27_001
NA
IL_7CPU_0041/L5/26:27,
1/L5/55:57
No text annotation
homologous
IL_8C3A_004
NA
IL_7CPU_0051/L5/30:37,
1/L5/44:52
9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_7CPU_0061/L5/81:88,
1/L5/96:102
No text annotation
homologous
IL_8C3A_006
NA
IL_7CPU_0071/L5/118:122,
1/L5/147:153
No text annotation
IL_7CPU_0081/L5/125:126,
1/L5/142:144
Single bulged U
geometric
IL_7KVT_002
IL_97561.1
IL_7CPU_0091/L5/168:173,
1/L5/262:266
No text annotation
IL_7CPU_0111/L5/195:196,
1/L5/244:246
Single bulged C
geometric
IL_1DQF_001
NA
IL_7CPU_0121/L5/199:201,
1/L5/214:215
Single bulged U
homologous
IL_8C3A_013
NA
IL_7CPU_0131/L5/338:341,
1/L8/32:33
Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
NA
IL_7CPU_0141/L5/347:349,
1/L8/25:26
Single bulged A
homologous
IL_8C3A_014
NA
IL_7CPU_0151/L5/386:389,
1/L5/400:413
No text annotation
geometric
IL_5TBW_014
NA
IL_7CPU_0161/L5/414:420,
1/L8/13:19
Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_7CPU_0171/L5/442:445,
1/L5/1115:1119
No text annotation
IL_7CPU_0181/L5/447:449,
1/L5/1112:1113
Single bulged C
geometric
IL_4C7O_003
NA
IL_7CPU_0191/L5/458:459,
1/L5/703:705
Single bulged U
geometric
IL_7RQB_080
NA
IL_7CPU_0201/L5/461:463,
1/L5/699:701
Isolated non-canonical cWW pair
geometric
IL_4V88_467
NA
IL_7CPU_0211/L5/465:471,
1/L5/690:697
No text annotation
IL_7CPU_0221/L5/488:489,
1/L5/673:677
No text annotation
IL_7CPU_0231/L5/492:495,
1/L5/667:670
Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA
IL_7CPU_0241/L5/495:498,
1/L5/664:667
Tandem non-canonical cWW pairs
geometric
IL_1JID_002
IL_15225.1
IL_7CPU_0251/L5/511:513,
1/L5/657:658
Single bulged A
geometric
IL_6WPI_001
IL_14190.1
IL_7CPU_0261/L5/717:718,
1/L5/1101:1103
Single bulged G
geometric
IL_4LFB_036
IL_28408.1
IL_7CPU_0271/L5/731:732,
1/L5/840:843
Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_7CPU_0281/L5/735:739,
1/L5/836:837
No text annotation
IL_7CPU_0291/L5/740:742,
1/L5/828:835
No text annotation
IL_7CPU_0301/L5/745:747,
1/L5/824:825
No text annotation
IL_7CPU_0311/L5/748:750,
1/L5/822:823
No text annotation
IL_7CPU_0321/L5/753:760,
1/L5/811:819
No text annotation
geometric
IL_5TBW_020
NA
IL_7CPU_0331/L5/929:930,
1/L5/1067:1069
Single bulged A
geometric
IL_4R4V_003
IL_14190.1
IL_7CPU_0351/L5/938:940,
1/L5/1047:1051
Isolated near basepair
geometric
IL_7A0S_030
IL_42997.4
IL_7CPU_0361/L5/942:943,
1/L5/1043:1045
Single bulged C
geometric
IL_3W3S_001
NA
IL_7CPU_0371/L5/949:950,
1/L5/1035:1037
No text annotation
IL_7CPU_2481/L5/949:953,
1/L5/1031:1037
Partly complementary
geometric
IL_7VYX_004
IL_71154.1
IL_7CPU_0381/L5/950:953,
1/L5/1031:1035
Tandem non-canonical cWW pairs
geometric
IL_1L9A_005
NA
IL_7CPU_0391/L5/1005:1007,
1/L5/1019:1022
No text annotation
geometric
IL_4V9F_053
IL_86407.1
IL_7CPU_0401/L5/1172:1175,
1/L5/1194:1197
No text annotation
IL_7CPU_2491/L5/1172:1176,
1/L5/1191:1197
No text annotation
IL_7CPU_0411/L5/1175:1176,
1/L5/1191:1194
Major groove intercalation
geometric
IL_1NBS_009
IL_71421.1
IL_7CPU_0421/L5/1239:1243,
1/L5/1269:1274
Triple sheared related
geometric
IL_4V9F_018
IL_67427.1
IL_7CPU_0431/L5/1245:1248,
1/L5/1264:1267
Double sheared
geometric
IL_4KZD_002
IL_58355.1
IL_7CPU_0441/L5/1281:1282,
1/L5/1310:1312
Single bulged A
homologous
IL_8C3A_026
NA
IL_7CPU_0451/L5/1288:1290,
1/L5/1303:1304
Single stack bend
geometric
IL_7A0S_005
IL_15011.1
IL_7CPU_0461/L5/1293:1294,
1/L5/1298:1300
Single bulged C
geometric
IL_5J7L_311
NA
IL_7CPU_0471/L5/1334:1336,
1/L5/1469:1471
Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_7CPU_0481/L5/1336:1340,
1/L5/1462:1469
tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_7CPU_0491/L5/1359:1360,
1/L5/1426:1428
Single bulged A
homologous
IL_8C3A_031
NA
IL_7CPU_0501/L5/1364:1365,
1/L5/1390:1392
Single bulged G
homologous
IL_8C3A_032
NA
IL_7CPU_0511/L5/1365:1369,
1/L5/1386:1390
Triple sheared
homologous
IL_8C3A_033
NA
IL_7CPU_0521/L5/1400:1403,
1/L5/1419:1421
Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_7CPU_0531/L5/1404:1406,
1/L5/1417:1418
Single bulged U
homologous
IL_8C3A_035
NA
IL_7CPU_0541/L5/1438:1440,
1/L5/1450:1454
No text annotation
homologous
IL_8C3A_036
NA
IL_7CPU_0551/L5/1485:1487,
1/L5/1496:1498
Isolated non-canonical cWW pair
homologous
IL_5TBW_034
NA
IL_7CPU_0561/L5/1500:1502,
1/L5/1651:1654
No text annotation
IL_7CPU_0581/L5/1526:1528,
1/L5/1641:1642
Single bulged G
homologous
IL_8C3A_040
NA
IL_7CPU_0591/L5/1535:1540,
1/L5/1595:1600
5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_7CPU_0601/L5/1540:1541,
1/L5/1593:1595
Minor groove platform
homologous
IL_8C3A_042
NA
IL_7CPU_0611/L5/1542:1547,
1/L5/1589:1592
C-loop
homologous
IL_5TBW_040
NA
IL_7CPU_0621/L5/1549:1552,
1/L5/1584:1587
Tandem non-canonical cWW pairs
homologous
IL_5TBW_041
NA
IL_7CPU_0631/L5/1552:1554,
1/L5/1582:1584
Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_7CPU_0641/L5/1617:1619,
1/L5/1626:1627
Single bulged G
homologous
IL_8C3A_048
NA
IL_7CPU_0651/L5/1661:1663,
1/L5/1677:1679
Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_7CPU_0671/L5/1708:1712,
1/L5/1870:1874
UAA/GAN
homologous
IL_8C3A_051
NA
IL_7CPU_0681/L5/1714:1721,
1/L5/1867:1868
SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_7CPU_0691/L5/1721:1723,
1/L5/1866:1867
No text annotation
IL_7CPU_0701/L5/1723:1725,
1/L5/1865:1866
No text annotation
IL_7CPU_0711/L5/1729:1736,
1/L5/1856:1861
No text annotation
homologous
IL_8C3A_054
NA
IL_7CPU_0721/L5/1736:1747,
1/L5/1841:1856
No text annotation
geometric
IL_5TBW_052
NA
IL_7CPU_0731/L5/1749:1751,
1/L5/1838:1839
Single bulged U
homologous
IL_5TBW_053
NA
IL_7CPU_2501/L5/1760:1775,
1/L5/1796:1829
No text annotation
IL_7CPU_0741/L5/1886:1888,
1/L5/2029:2030
Single bulged C
geometric
IL_4C7O_003
NA
IL_7CPU_0751/L5/2047:2049,
1/L5/2099:2102
No text annotation
homologous
IL_8C3A_061
NA
IL_7CPU_0761/L5/2056:2058,
1/L5/2091:2092
Single bulged A
homologous
IL_8C3A_062
NA
IL_7CPU_0771/L5/2059:2066,
1/L5/2086:2090
Kink-turn
homologous
IL_5TBW_059
NA
IL_7CPU_0781/L5/2069:2071,
1/L5/2082:2083
Single bulged A
homologous
IL_5TBW_060
NA
IL_7CPU_0791/L5/2115:2121,
1/L5/3515:3520
No text annotation
homologous
IL_8C3A_065
NA
IL_7CPU_0801/L5/2172:2176,
1/L5/2184:2186
C-loop
geometric
IL_7A0S_047
IL_06671.1
IL_7CPU_0811/L5/2203:2207,
1/L5/2266:2271
UAA/GAN
homologous
IL_8C3A_067
NA
IL_7CPU_0821/L5/2234:2237,
1/L5/2255:2257
Isolated non-canonical cWW pair
geometric
IL_1XJR_003
NA
IL_7CPU_0831/L5/2299:2304,
1/L5/2526:2528
Isolated non-canonical cWW pair
geometric
IL_5J7L_009
NA
IL_7CPU_0841/L5/2306:2307,
1/L5/2522:2524
Single bulged U
geometric
IL_2A64_002
NA
IL_7CPU_0851/L5/2313:2315,
1/L5/2323:2325
Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_01003.1
IL_7CPU_0861/L5/2343:2347,
1/L5/2506:2510
Triple sheared
geometric
IL_7RQB_075
NA
IL_7CPU_0871/L5/2367:2368,
1/L5/2478:2480
Single bulged C
homologous
IL_8C3A_075
NA
IL_7CPU_0881/L5/2368:2369,
1/L5/2476:2478
Single stack bend
homologous
IL_8C3A_076
NA
IL_7CPU_0891/L5/2400:2402,
1/L5/2439:2442
Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.1
IL_7CPU_0901/L5/2405:2407,
1/L5/2435:2436
Single bulged G
geometric
IL_5J7L_019
NA
IL_7CPU_0911/L5/2410:2416,
1/L5/2426:2432
Kink-turn
homologous
IL_5TBW_073
NA
IL_7CPU_0921/L5/2586:2592,
1/L5/3507:3510
No text annotation
homologous
IL_5TBW_074
NA
IL_7CPU_0931/L5/2598:2600,
1/L5/3499:3501
No text annotation
homologous
IL_8C3A_081
NA
IL_7CPU_0941/L5/2601:2604,
1/L5/3497:3498
Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_7CPU_2511/L5/2601:2609,
1/L5/3494:3498
No text annotation
homologous
IL_8C3A_484
NA
IL_7CPU_0951/L5/2604:2609,
1/L5/3494:3497
No text annotation
homologous
IL_8C3A_083
NA
IL_7CPU_0961/L5/2621:2626,
1/L5/2631:2637
tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_20700.1
IL_7CPU_0971/L5/2643:2645,
1/L5/3267:3269
Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_7CPU_0981/L5/2650:2651,
1/L5/3259:3262
No text annotation
homologous
IL_8C3A_086
NA
IL_7CPU_0991/L5/3289:3290,
1/L5/3484:3486
Single bulged A
homologous
IL_5TBW_082
NA
IL_7CPU_1001/L5/3317:3322,
1/L5/3334:3341
Kink-turn related
homologous
IL_5TBW_083
NA
IL_7CPU_1011/L5/3357:3360,
1/L5/3406:3407
Major groove intercalation
homologous
IL_5TBW_084
NA
IL_7CPU_1021/L5/3361:3362,
1/L5/3402:3405
Major groove intercalation
homologous
IL_5TBW_085
NA
IL_7CPU_1031/L5/3365:3367,
1/L5/3398:3399
Single stack bend
geometric
IL_7A0S_054
IL_15011.1
IL_7CPU_2521/L5/3365:3371,
1/L5/3396:3399
No text annotation
IL_7CPU_1041/L5/3367:3371,
1/L5/3396:3398
No text annotation
IL_7CPU_1051/L5/3372:3378,
1/L5/3389:3395
No text annotation
homologous
IL_8C3A_093
NA
IL_7CPU_1061/L5/3437:3438,
1/L5/3468:3471
Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_7CPU_1071/L5/3438:3449,
1/L5/3465:3468
No text annotation
homologous
IL_5TBW_090
NA
IL_7CPU_1081/L5/3552:3555,
1/L5/4216:4218
Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_7CPU_1091/L5/3557:3559,
1/L5/4211:4214
No text annotation
homologous
IL_8C3A_097
NA
IL_7CPU_1101/L5/3570:3572,
1/L5/4041:4042
Single bulged U
homologous
IL_5TBW_093
NA
IL_7CPU_1111/L5/3573:3574,
1/L5/4037:4040
Minor groove platform
homologous
IL_5TBW_094
NA
IL_7CPU_1121/L5/3584:3586,
1/L5/3834:3837
No text annotation
homologous
IL_8C3A_100
NA
IL_7CPU_1131/L5/3733:3739,
1/L5/3814:3817
No text annotation
homologous
IL_8C3A_106
NA
IL_7CPU_1141/L5/3742:3780,
1/L5/3808:3811
No text annotation
IL_7CPU_1151/L5/3844:3845,
1/L5/3855:3857
Single bulged A
homologous
IL_5TBW_098
NA
IL_7CPU_1161/L5/3896:3898,
1/L5/3916:3920
No text annotation
homologous
IL_8C3A_108
NA
IL_7CPU_1171/L5/3944:3946,
1/L5/3970:3971
Single bulged A
geometric
IL_5WWT_001
IL_14190.1
IL_7CPU_1181/L5/3948:3951,
1/L5/3965:3968
Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_7CPU_1191/L5/4000:4003,
1/L5/4017:4018
Single stack bend
geometric
IL_5J7L_032
NA
IL_7CPU_1201/L5/4053:4054,
1/L5/4095:4097
Major groove platform
homologous
IL_5TBW_102
NA
IL_7CPU_2531/L5/4053:4056,
1/L5/4093:4097
No text annotation
homologous
IL_8C3A_111
NA
IL_7CPU_1211/L5/4054:4056,
1/L5/4093:4095
Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_7CPU_1221/L5/4056:4058,
1/L5/4092:4093
Major groove platform
geometric
IL_5TBW_104
NA
IL_7CPU_1231/L5/4058:4060,
1/L5/4088:4092
Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_7CPU_1241/L5/4065:4069,
1/L5/4079:4083
No text annotation
homologous
IL_8C3A_114
NA
IL_7CPU_1251/L5/4106:4107,
1/L5/4179:4181
Major groove platform
homologous
IL_8C3A_115
NA
IL_7CPU_1261/L5/4109:4111,
1/L5/4173:4177
No text annotation
homologous
IL_8C3A_116
NA
IL_7CPU_1271/L5/4111:4112,
1/L5/4170:4173
Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_7CPU_1281/L5/4119:4121,
1/L5/4142:4144
Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_7CPU_2541/L5/4119:4123,
1/L5/4138:4144
No text annotation
IL_7CPU_1291/L5/4121:4123,
1/L5/4138:4142
No text annotation
geometric
IL_3DD2_004
NA
IL_7CPU_1301/L5/4148:4150,
1/L5/4156:4158
Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_7CPU_1311/L5/4190:4191,
1/L5/4200:4202
Single bulged A
homologous
IL_5TBW_113
NA
IL_7CPU_1321/L5/4233:4235,
1/L5/4374:4376
No text annotation
geometric
IL_3ICQ_003
NA
IL_7CPU_1331/L5/4235:4238,
1/L5/4370:4374
Double sheared
geometric
IL_6E7L_002
NA
IL_7CPU_1341/L5/4243:4245,
1/L5/4271:4273
Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_7CPU_1351/L5/4249:4256,
1/L5/4261:4267
8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_7CPU_1361/L5/4277:4282,
1/L5/4322:4326
No text annotation
IL_7CPU_1371/L5/4285:4290,
1/L5/4315:4319
UAA/GAN related
homologous
IL_5TBW_118
NA
IL_7CPU_1381/L5/4291:4293,
1/L5/4312:4314
Isolated cWH basepair
geometric
IL_3R1C_018
IL_10892.1
IL_7CPU_1391/L5/4294:4295,
1/L5/4308:4311
Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_7CPU_1401/L5/4333:4338,
1/L5/4358:4363
UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_7CPU_1411/L5/4392:4396,
1/L5/4606:4608
Isolated cWH basepair
geometric
IL_2W2H_002
NA
IL_7CPU_1421/L5/4397:4400,
1/L5/4602:4605
Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_7CPU_1431/L5/4401:4403,
1/L5/4599:4601
Isolated non-canonical cWW pair
geometric
IL_3BNT_001
IL_71625.1
IL_7CPU_1441/L5/4403:4405,
1/L5/4596:4599
No text annotation
IL_7CPU_1451/L5/4410:4419,
1/L5/4515:4523
No text annotation
IL_7CPU_1461/L5/4531:4534,
1/L5/4577:4580
Tandem non-canonical cWW pairs
geometric
IL_4EYA_003
IL_71194.1
IL_7CPU_1471/L5/4537:4542,
1/L5/4570:4574
No text annotation
IL_7CPU_2711/L5/4545:4550,
1/L5/4563:4567
No text annotation
IL_7CPU_1491/L5/4620:4623,
1/L5/4631:4634
Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_7CPU_1501/L5/4640:4642,
1/L5/4705:4707
Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_01003.1
IL_7CPU_1511/L5/4644:4645,
1/L5/4701:4703
Single bulged U
homologous
IL_8C3A_137
NA
IL_7CPU_1521/L5/4648:4650,
1/L5/4693:4698
Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_7CPU_1531/L5/4651:4657,
1/L5/4687:4692
No text annotation
IL_7CPU_1541/L5/4660:4662,
1/L5/4683:4684
Single bulged U
homologous
IL_8C3A_140
NA
IL_7CPU_1551/L5/4662:4665,
1/L5/4680:4683
Double sheared
geometric
IL_4V9F_100
IL_58355.1
IL_7CPU_1561/L7/15:16,
1/L7/62:64
Single bulged A
homologous
IL_5TBW_372
NA
IL_7CPU_1571/L7/21:27,
1/L7/52:57
Minor groove platform related
homologous
IL_5TBW_373
NA
IL_7CPU_1581/L7/28:29,
1/L7/48:51
Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_7CPU_1591/L7/32:36,
1/L7/41:45
Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_7CPU_1601/L7/71:78,
1/L7/98:104
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_007
IL_62167.1
IL_7CPU_1611/L7/79:81,
1/L7/95:97
No text annotation
geometric
IL_7RQB_015
NA
IL_7CPU_1621/L7/82:85,
1/L7/92:94
Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_7CPU_1631/L8/64:66,
1/L8/92:95
Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_7CPU_1641/S2/23:25,
1/S2/650:652
Isolated non-canonical cWW pair
geometric
IL_7A0S_020
IL_01003.1
IL_7CPU_1651/S2/34:36,
1/S2/520:522
Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_7CPU_1661/S2/37:40,
1/S2/515:519
Double sheared
geometric
IL_4WF9_016
IL_58355.1
IL_7CPU_1671/S2/41:47,
1/S2/480:482
No text annotation
geometric
IL_4V88_387
NA
IL_7CPU_1681/S2/49:51,
1/S2/477:478
Minor groove platform
homologous
IL_4V88_388
NA
IL_7CPU_1691/S2/57:62,
1/S2/86:88
No text annotation
homologous
IL_4V88_389
NA
IL_7CPU_2561/S2/63:68,
1/S2/81:85
No text annotation
homologous
IL_8P9A_379
IL_21667.2
IL_7CPU_1711/S2/108:112,
1/S2/350:354
Triple non-canonical cWW pairs
geometric
IL_5BTM_001
IL_71154.1
IL_7CPU_1721/S2/112:115,
1/S2/349:350
Multiple bulged bases
geometric
IL_4V88_392
NA
IL_7CPU_1731/S2/116:121,
1/S2/344:348
No text annotation
homologous
IL_4V88_393
NA
IL_7CPU_1741/S2/145:151,
1/S2/167:174
tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_7CPU_1751/S2/152:154,
1/S2/164:166
Isolated non-canonical cWW contact
homologous
IL_4V88_395
NA
IL_7CPU_2571/S2/152:156,
1/S2/162:166
No text annotation
IL_7CPU_1781/S2/313:315,
1/S2/337:338
Single bulged A
homologous
IL_4V88_399
NA
IL_7CPU_1791/S2/318:320,
1/S2/333:334
No text annotation
IL_7CPU_1801/S2/360:365,
1/S2/397:404
Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_7CPU_1811/S2/367:372,
1/S2/394:395
No text annotation
geometric
IL_5Y58_001
IL_45649.1
IL_7CPU_1821/S2/412:414,
1/S2/425:430
No text annotation
homologous
IL_4V88_404
NA
IL_7CPU_1831/S2/438:440,
1/S2/455:457
Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_7CPU_1841/S2/460:462,
1/S2/469:471
Isolated near basepair
homologous
IL_4V88_406
NA
IL_7CPU_1851/S2/488:490,
1/S2/512:513
Single bulged U
homologous
IL_4V88_407
NA
IL_7CPU_1861/S2/492:496,
1/S2/509:510
C-loop
geometric
IL_5J7L_018
NA
IL_7CPU_1871/S2/496:497,
1/S2/507:509
Single bulged G
geometric
IL_5J7L_019
NA
IL_7CPU_1911/S2/600:607,
1/S2/637:638
SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_7CPU_1921/S2/607:609,
1/S2/636:637
Single bulged U
homologous
IL_4V88_414
NA
IL_7CPU_1931/S2/612:618,
1/S2/625:633
Kink-turn related
homologous
IL_4V88_415
NA
IL_7CPU_1941/S2/664:666,
1/S2/1163:1165
Isolated non-canonical cWW pair
geometric
IL_1Y27_001
NA
IL_7CPU_1951/S2/666:672,
1/S2/1162:1163
No text annotation
geometric
IL_5J7L_026
NA
IL_7CPU_1961/S2/674:676,
1/S2/1031:1033
Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_7CPU_1971/S2/677:681,
1/S2/1026:1030
tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_7CPU_2721/S2/803:804,
1/S2/861:864
No text annotation
homologous
IL_8P9A_412
IL_73108.1
IL_7CPU_1991/S2/806:808,
1/S2/857:859
Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_7CPU_2001/S2/808:816,
1/S2/850:857
No text annotation
homologous
IL_4V88_425
NA
IL_7CPU_2011/S2/875:877,
1/S2/911:913
Isolated non-canonical cWW pair
geometric
IL_5Y85_006
IL_01003.1
IL_7CPU_2021/S2/878:880,
1/S2/908:910
Isolated non-canonical cWW pair
geometric
IL_4LFB_059
IL_01003.1
IL_7CPU_2031/S2/923:924,
1/S2/1020:1023
Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_7CPU_2601/S2/926:927,
1/S2/1016:1018
Single bulged U
geometric
IL_3NDB_005
NA
IL_7CPU_2051/S2/929:932,
1/S2/1011:1014
Tandem non-canonical cWW pairs
geometric
IL_4V88_430
NA
IL_7CPU_2061/S2/932:936,
1/S2/1008:1011
Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_7CPU_2071/S2/943:946,
1/S2/982:985
Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_7CPU_2081/S2/953:957,
1/S2/968:975
Kink-turn
homologous
IL_4V88_434
NA
IL_7CPU_2091/S2/1043:1048,
1/S2/1072:1074
Other IL
geometric
IL_4V88_435
NA
IL_7CPU_2101/S2/1048:1052,
1/S2/1068:1072
tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_7CPU_2111/S2/1092:1094,
1/S2/1153:1159
No text annotation
homologous
IL_4V88_437
NA
IL_7CPU_2121/S2/1099:1102,
1/S2/1132:1135
Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_7CPU_2131/S2/1102:1104,
1/S2/1130:1132
Isolated non-canonical cWW pair
geometric
IL_4V88_444
NA
IL_7CPU_2141/S2/1109:1111,
1/S2/1124:1125
Minor groove platform
geometric
IL_4V88_412
NA
IL_7CPU_2151/S2/1169:1176,
1/S2/1187:1192
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_7CPU_2161/S2/1204:1205,
1/S2/1695:1697
Single bulged A
homologous
IL_4V88_441
NA
IL_7CPU_2171/S2/1207:1209,
1/S2/1692:1693
Single bulged G
homologous
IL_4V88_442
NA
IL_7CPU_2181/S2/1215:1218,
1/S2/1682:1686
C-loop
homologous
IL_4V88_443
NA
IL_7CPU_2191/S2/1231:1233,
1/S2/1527:1529
Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_7CPU_2201/S2/1236:1237,
1/S2/1522:1524
Minor groove platform
homologous
IL_4V88_445
NA
IL_7CPU_2211/S2/1271:1273,
1/S2/1511:1513
Isolated non-canonical cWW pair
homologous
IL_4V88_446
NA
IL_7CPU_2611/S2/1271:1274,
1/S2/1511:1513
No text annotation
geometric
IL_4N0T_004
IL_32983.1
IL_7CPU_2221/S2/1281:1291,
1/S2/1310:1318
No text annotation
IL_7CPU_2231/S2/1292:1294,
1/S2/1307:1309
No text annotation
homologous
IL_4V88_448
NA
IL_7CPU_2241/S2/1326:1328,
1/S2/1503:1504
Single bulged U
homologous
IL_4V88_449
NA
IL_7CPU_2251/S2/1330:1334,
1/S2/1499:1501
Isolated cWS basepair
homologous
IL_4V88_450
NA
IL_7CPU_2621/S2/1330:1335,
1/S2/1497:1501
No text annotation
geometric
IL_6CZR_365
NA
IL_7CPU_2631/S2/1330:1336,
1/S2/1493:1501
No text annotation
geometric
IL_4V88_510
NA
IL_7CPU_2641/S2/1334:1335,
1/S2/1497:1499
No text annotation
geometric
IL_8ZA0_002
IL_28408.1
IL_7CPU_2651/S2/1335:1336,
1/S2/1493:1497
Minor groove platform
geometric
IL_4LFB_045
IL_24264.1
IL_7CPU_2271/S2/1338:1339,
1/S2/1489:1491
Single bulged A
homologous
IL_4V88_452
NA
IL_7CPU_2661/S2/1348:1350,
1/S2/1381:1383
Isolated cWH basepair
homologous
IL_8P9A_442
IL_10892.1
IL_7CPU_2291/S2/1364:1366,
1/S2/1375:1376
Minor groove platform
geometric
IL_4V88_454
NA
IL_7CPU_2301/S2/1396:1400,
1/S2/1448:1451
Tandem non-canonical cWW pairs
geometric
IL_6JDV_002
IL_15225.1
IL_7CPU_2311/S2/1403:1406,
1/S2/1442:1445
Minor groove platform
homologous
IL_4V88_456
NA
IL_7CPU_2321/S2/1413:1414,
1/S2/1428:1430
Single bulged G
geometric
IL_5J7L_019
NA
IL_7CPU_2331/S2/1538:1540,
1/S2/1595:1597
Isolated non-canonical cWW pair
geometric
IL_2OE5_001
NA
IL_7CPU_2691/S2/1542:1551,
1/S2/1583:1593
No text annotation
IL_7CPU_2341/S2/1551:1559,
1/S2/1578:1583
180 degree turn
geometric
IL_5J7L_055
NA
IL_7CPU_2351/S2/1605:1611,
1/S2/1630:1636
No text annotation
homologous
IL_8C3A_469
NA
IL_7CPU_2361/S2/1701:1703,
1/S2/1834:1837
No text annotation
geometric
IL_4V88_463
NA
IL_7CPU_2371/S2/1703:1706,
1/S2/1830:1834
No text annotation
homologous
IL_4V88_464
NA
IL_7CPU_2381/S2/1707:1709,
1/S2/1827:1829
Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_7CPU_2701/S2/1709:1712,
1/S2/1823:1827
No text annotation
homologous
IL_8CRE_469
IL_28833.1
IL_7CPU_2401/S2/1715:1717,
1/S2/1818:1820
Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_7CPU_2411/S2/1718:1721,
1/S2/1814:1817
Double sheared
geometric
IL_4V88_468
NA
IL_7CPU_2421/S2/1721:1723,
1/S2/1813:1814
Single bulged U
homologous
IL_4V88_469
NA
IL_7CPU_2431/S2/1730:1732,
1/S2/1804:1806
Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_7CPU_2441/S2/1734:1737,
1/S2/1799:1802
Double sheared
homologous
IL_4V88_471
NA
IL_7CPU_2451/S2/1740:1742,
1/S2/1794:1796
Isolated non-canonical cWW pair
geometric
IL_4E48_002
IL_01003.1
IL_7CPU_2461/S2/1743:1747,
1/S2/1789:1793
Triple sheared
homologous
IL_4V88_474
NA
IL_7CPU_2471/S2/1751:1757,
1/S2/1778:1785
No text annotation

Problematic loops

#loop idProblemSequence
IL_7CPU_010No text annotation
IL_7CPU_034No text annotation
IL_7CPU_057No text annotation
IL_7CPU_066No text annotation
IL_7CPU_148No text annotation
IL_7CPU_255No text annotation
IL_7CPU_170No text annotation
IL_7CPU_176No text annotation
IL_7CPU_177No text annotation
IL_7CPU_188No text annotation
IL_7CPU_258No text annotation
IL_7CPU_189Single stack bend
IL_7CPU_190No text annotation
IL_7CPU_259Tandem non-canonical cWW pairs
IL_7CPU_198Major groove minor groove platform with extra cWW
IL_7CPU_204Isolated cWH basepair
IL_7CPU_226Minor groove platform with extra cWW
IL_7CPU_228Tandem non-canonical cWW pairs
IL_7CPU_267Isolated non-canonical cWW pair
IL_7CPU_268No text annotation
IL_7CPU_239No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7CPU_0011/L5/112:116,
1/L5/155:160,
1/L5/274:277
No text annotation
J3_7CPU_0331/L5/196:199,
1/L5/215:228,
1/L5/240:244
No text annotation
J3_7CPU_0341/L5/350:366,
1/L5/373:378,
1/L8/21:24
No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_7CPU_0021/L5/379:386,
1/L5/413:414,
1/L8/19:20
No text annotation
homologous
J3_5TBW_002
NA
J3_7CPU_0351/L5/379:389,
1/L5/400:414,
1/L8/19:20
No text annotation
homologous
J3_8C3A_049
NA
J3_7CPU_0361/L5/450:454,
1/L5/709:713,
1/L5/1107:1111
No text annotation
J3_7CPU_0051/L5/1345:1351,
1/L5/1436:1438,
1/L5/1454:1457
No text annotation
homologous
J3_8C3A_003
NA
J3_7CPU_0061/L5/1360:1362,
1/L5/1394:1398,
1/L5/1423:1426
No text annotation
homologous
J3_8C3A_004
NA
J3_7CPU_0071/L5/1529:1530,
1/L5/1605:1609,
1/L5/1635:1640
No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_7CPU_0081/L5/2150:2156,
1/L5/2559:2561,
1/L5/2573:2576
No text annotation
homologous
J3_5TBW_008
NA
J3_7CPU_0091/L5/2159:2162,
1/L5/2539:2545,
1/L5/2554:2556
No text annotation
homologous
J3_8C3A_007
NA
J3_7CPU_0101/L5/2197:2202,
1/L5/2272:2276,
1/L5/2293:2294
No text annotation
homologous
J3_5TBW_010
NA
J3_7CPU_0371/L5/2208:2213,
1/L5/2222:2233,
1/L5/2258:2265
No text annotation
J3_7CPU_0111/L5/2308:2312,
1/L5/2326:2329,
1/L5/2511:2521
No text annotation
J3_7CPU_0121/L5/2329:2330,
1/L5/2339:2343,
1/L5/2510:2511
No text annotation
homologous
J3_8C3A_054
NA
J3_7CPU_0381/L5/2352:2356,
1/L5/2491:2492,
1/L5/2496:2501
No text annotation
homologous
J3_8C3A_055
NA
J3_7CPU_0131/L5/3594:3596,
1/L5/3725:3729,
1/L5/3821:3826
No text annotation
geometric
J3_8VTW_006
NA
J3_7CPU_0141/L5/3881:3883,
1/L5/3984:3995,
1/L5/4023:4028
No text annotation
homologous
J3_8C3A_056
NA
J3_7CPU_0151/L5/3894:3896,
1/L5/3920:3922,
1/L5/3931:3936
No text annotation
homologous
J3_5TBW_013
NA
J3_7CPU_0161/L5/4116:4119,
1/L5/4144:4146,
1/L5/4160:4166
No text annotation
homologous
J3_5TBW_014
NA
J3_7CPU_0391/L5/4405:4408,
1/L5/4525:4529,
1/L5/4582:4596
No text annotation
J3_7CPU_0451/L5/4618:4620,
1/L5/4634:4639,
1/L5/4708:4711
No text annotation
J3_7CPU_0401/L7/9:14,
1/L7/65:66,
1/L7/109:110
No text annotation
homologous
J3_8P9A_066
J3_26985.1
J3_7CPU_0191/L8/44:45,
1/L8/58:64,
1/L8/95:99
No text annotation
homologous
J3_8C3A_060
NA
J3_7CPU_0201/S2/40:41,
1/S2/482:488,
1/S2/513:515
No text annotation
geometric
J3_8C3A_082
NA
J3_7CPU_0411/S2/40:47,
1/S2/480:488,
1/S2/513:515
No text annotation
homologous
J3_8C3A_083
NA
J3_7CPU_0211/S2/683:686,
1/S2/918:923,
1/S2/1023:1024
No text annotation
J3_7CPU_0421/S2/683:686,
1/S2/918:924,
1/S2/1020:1024
No text annotation
J3_7CPU_0461/S2/817:820,
1/S2/830:832,
1/S2/844:849
No text annotation
homologous
J3_8P9A_073
J3_97642.2
J3_7CPU_0231/S2/939:942,
1/S2/986:994,
1/S2/1001:1005
No text annotation
homologous
J3_4V88_033
NA
J3_7CPU_0241/S2/1095:1097,
1/S2/1137:1141,
1/S2/1148:1152
No text annotation
J3_7CPU_0251/S2/1219:1222,
1/S2/1646:1652,
1/S2/1674:1681
No text annotation
homologous
J3_4V88_035
NA
J3_7CPU_0261/S2/1226:1229,
1/S2/1531:1533,
1/S2/1639:1642
No text annotation
homologous
J3_8C3A_039
NA
J3_7CPU_0271/S2/1238:1245,
1/S2/1256:1267,
1/S2/1517:1521
No text annotation
homologous
J3_8C3A_040
NA
J3_7CPU_0431/S2/1274:1278,
1/S2/1321:1325,
1/S2/1505:1511
No text annotation
homologous
J3_8C3A_041
NA
J3_7CPU_0291/S2/1341:1346,
1/S2/1385:1390,
1/S2/1482:1487
No text annotation
homologous
J3_8P9A_080
J3_17077.1
J3_7CPU_0301/S2/1351:1352,
1/S2/1361:1364,
1/S2/1376:1380
No text annotation
homologous
J3_8C3A_085
NA
J3_7CPU_0311/S2/1392:1396,
1/S2/1451:1457,
1/S2/1471:1480
No text annotation
J3_7CPU_0441/S2/1392:1400,
1/S2/1448:1457,
1/S2/1471:1480
No text annotation
J3_7CPU_0321/S2/1533:1537,
1/S2/1598:1605,
1/S2/1636:1639
No text annotation
homologous
J3_8C3A_044
NA
J4_7CPU_0011/L5/111:112,
1/L5/277:282,
1/L5/303:309,
1/L5/326:329
No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_7CPU_0021/L5/196:199,
1/L5/215:222,
1/L5/226:228,
1/L5/240:244
No text annotation
J4_7CPU_0031/L5/2122:2128,
1/L5/2146:2148,
1/L5/2578:2583,
1/L5/3513:3514
No text annotation
J4_7CPU_0041/L5/2163:2167,
1/L5/2191:2196,
1/L5/2295:2296,
1/L5/2531:2538
No text annotation
homologous
J4_8C3A_004
NA
J4_7CPU_0051/L5/2208:2213,
1/L5/2222:2226,
1/L5/2228:2233,
1/L5/2258:2265
No text annotation
J4_7CPU_0061/L5/2372:2373,
1/L5/2391:2396,
1/L5/2446:2452,
1/L5/2472:2473
No text annotation
J4_7CPU_0071/L5/3291:3295,
1/L5/3307:3311,
1/L5/3347:3351,
1/L5/3478:3483
No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_7CPU_0081/L5/3353:3355,
1/L5/3409:3410,
1/L5/3428:3437,
1/L5/3471:3476
No text annotation
homologous
J4_8P9A_018
J4_42306.1
J4_7CPU_0091/L5/3884:3888,
1/L5/3942:3944,
1/L5/3971:3972,
1/L5/3981:3983
No text annotation
J4_7CPU_0101/L5/3884:3888,
1/L5/3942:3946,
1/L5/3970:3972,
1/L5/3981:3983
No text annotation
homologous
J4_8C3A_008
NA
J4_7CPU_0111/L5/4240:4243,
1/L5/4273:4274,
1/L5/4329:4331,
1/L5/4365:4368
No text annotation
J4_7CPU_0121/S2/98:106,
1/S2/356:358,
1/S2/406:410,
1/S2/432:433
No text annotation
homologous
J4_8P9A_021
J4_15241.2
J4_7CPU_0131/S2/672:674,
1/S2/1033:1038,
1/S2/1079:1090,
1/S2/1161:1162
No text annotation
homologous
J4_8C3A_022
NA
J4_7CPU_0141/S6/8:11,
1/S6/25:27,
1/S6/43:49,
1/S6/65:66
tRNA junction
homologous
J4_5AXM_001
J4_58311.1
J5_7CPU_0081/L5/20:21,
1/L8/35:42,
1/L8/101:106,
1/L8/113:114,
1/L8/136:137
No text annotation
J5_7CPU_0021/L5/1150:1155,
1/L5/1330:1333,
1/L5/1472:1475,
1/L5/2045:2047,
1/L5/2102:2108
No text annotation
homologous
J5_8C3A_002
NA
J5_7CPU_0031/L5/2609:2617,
1/L5/2641:2642,
1/L5/3270:3271,
1/L5/3275:3283,
1/L5/3492:3494
No text annotation
homologous
J5_8C3A_004
NA
J5_7CPU_0041/L5/3559:3567,
1/L5/4045:4053,
1/L5/4097:4106,
1/L5/4181:4187,
1/L5/4205:4211
No text annotation
J5_7CPU_0051/L5/3577:3580,
1/L5/3841:3844,
1/L5/3857:3858,
1/L5/3880:3881,
1/L5/4028:4034
No text annotation
homologous
J5_8C3A_006
NA
J5_7CPU_0061/S2/30:34,
1/S2/522:528,
1/S2/559:566,
1/S2/586:596,
1/S2/642:645
No text annotation
J5_7CPU_0071/S2/53:56,
1/S2/89:96,
1/S2/435:437,
1/S2/458:460,
1/S2/471:475
No text annotation
homologous
J5_8C3A_020
NA
J6_7CPU_0011/L5/21:26,
1/L5/57:67,
1/L5/74:78,
1/L5/105:109,
1/L5/331:338,
1/L8/33:35
No text annotation
J6_7CPU_0021/L5/1167:1170,
1/L5/1199:1203,
1/L5/1210:1214,
1/L5/1232:1235,
1/L5/1278:1280,
1/L5/1313:1318
No text annotation
J6_7CPU_0031/L5/3577:3580,
1/L5/3841:3844,
1/L5/3857:3858,
1/L5/3880:3883,
1/L5/3984:3995,
1/L5/4023:4034
No text annotation
J7_7CPU_0011/L5/1480:1485,
1/L5/1498:1499,
1/L5/1655:1658,
1/L5/1682:1687,
1/L5/1698:1702,
1/L5/1880:1881,
1/L5/2035:2040
No text annotation

Problematic loops

#loop idProblemSequence
J3_7CPU_003No text annotation
J3_7CPU_004No text annotation
J3_7CPU_017No text annotation
J3_7CPU_018No text annotation
J3_7CPU_022No text annotation
J3_7CPU_028No text annotation
J5_7CPU_001No text annotation

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