7CPU Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_7CPU_001 | 1/L5/37:44 | No text annotation | homologous HL_5TBW_001 NA | |
HL_7CPU_002 | 1/L5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
HL_7CPU_003 | 1/L5/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
HL_7CPU_004 | 1/L5/131:137 | No text annotation | geometric HL_4WF9_011 HL_75660.6 | |
HL_7CPU_005 | 1/L5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
HL_7CPU_006 | 1/L5/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
HL_7CPU_007 | 1/L5/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
HL_7CPU_008 | 1/L5/288:297 | No text annotation | homologous HL_5TBW_008 NA | |
HL_7CPU_009 | 1/L5/313:322 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
HL_7CPU_010 | 1/L5/367:372 | GNRA | homologous HL_8C3A_010 NA | |
HL_7CPU_011 | 1/L5/392:397 | GNRA | homologous HL_8C3A_011 NA | |
HL_7CPU_118 | 1/L5/1005:1022 | No text annotation | ||
HL_7CPU_014 | 1/L5/1007:1019 | No text annotation | ||
HL_7CPU_015 | 1/L5/1132:1141 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
HL_7CPU_119 | 1/L5/1179:1188 | No text annotation | ||
HL_7CPU_017 | 1/L5/1204:1209 | GNRA | homologous HL_8C3A_016 NA | |
HL_7CPU_018 | 1/L5/1220:1226 | No text annotation | geometric HL_5TBW_006 NA | |
HL_7CPU_019 | 1/L5/1250:1262 | Externally structured | geometric HL_8C3A_022 NA | |
HL_7CPU_020 | 1/L5/1294:1298 | No text annotation | ||
HL_7CPU_021 | 1/L5/1375:1380 | GNRA | homologous HL_5TBW_019 NA | |
HL_7CPU_022 | 1/L5/1407:1416 | No text annotation | homologous HL_5TBW_020 NA | |
HL_7CPU_023 | 1/L5/1441:1449 | No text annotation | homologous HL_5TBW_021 NA | |
HL_7CPU_024 | 1/L5/1489:1494 | Externally structured | homologous HL_8C3A_022 NA | |
HL_7CPU_025 | 1/L5/1556:1580 | No text annotation | ||
HL_7CPU_026 | 1/L5/1619:1626 | No text annotation | geometric HL_5TBW_024 NA | |
HL_7CPU_027 | 1/L5/1667:1673 | GNRA | homologous HL_8C3A_025 NA | |
HL_7CPU_028 | 1/L5/1689:1696 | No text annotation | homologous HL_8C3A_026 NA | |
HL_7CPU_030 | 1/L5/2014:2018 | Mini UNCG | geometric HL_4V9F_021 HL_90436.1 | |
HL_7CPU_031 | 1/L5/2074:2079 | GNRA | homologous HL_8C3A_030 NA | |
HL_7CPU_032 | 1/L5/2133:2141 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
HL_7CPU_033 | 1/L5/2177:2183 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
HL_7CPU_034 | 1/L5/2215:2220 | GNRA variation | homologous HL_5TBW_033 NA | |
HL_7CPU_035 | 1/L5/2226:2228 | No text annotation | ||
HL_7CPU_036 | 1/L5/2239:2253 | No text annotation | ||
HL_7CPU_037 | 1/L5/2280:2289 | No text annotation | homologous HL_5TBW_035 NA | |
HL_7CPU_038 | 1/L5/2315:2323 | tRNA D-loop | geometric HL_4V90_032 NA | |
HL_7CPU_039 | 1/L5/2332:2337 | GNRA | homologous HL_8C3A_036 NA | |
HL_7CPU_040 | 1/L5/2378:2386 | No text annotation | homologous HL_8C3A_037 NA | |
HL_7CPU_041 | 1/L5/2418:2424 | Other HL | geometric HL_4V9F_039 HL_67772.1 | |
HL_7CPU_042 | 1/L5/2458:2466 | No text annotation | geometric HL_2Y9H_005 HL_51020.1 | |
HL_7CPU_043 | 1/L5/2492:2496 | No text annotation | homologous HL_8C3A_040 NA | |
HL_7CPU_044 | 1/L5/2546:2553 | No text annotation | homologous HL_8C3A_041 NA | |
HL_7CPU_045 | 1/L5/2564:2570 | GNRA | homologous HL_5TBW_042 NA | |
HL_7CPU_046 | 1/L5/2626:2631 | UNCG | homologous HL_8C3A_043 NA | |
HL_7CPU_048 | 1/L5/3271:3275 | No text annotation | homologous HL_8C3A_045 NA | |
HL_7CPU_049 | 1/L5/3296:3306 | No text annotation | homologous HL_5TBW_046 NA | |
HL_7CPU_050 | 1/L5/3325:3331 | GNRA | homologous HL_8C3A_047 NA | |
HL_7CPU_051 | 1/L5/3381:3386 | GNRA | homologous HL_8C3A_048 NA | |
HL_7CPU_052 | 1/L5/3414:3424 | No text annotation | homologous HL_8C3A_049 NA | |
HL_7CPU_053 | 1/L5/3453:3461 | No text annotation | homologous HL_8C3A_050 NA | |
HL_7CPU_054 | 1/L5/3530:3539 | No text annotation | homologous HL_8C3A_051 NA | |
HL_7CPU_057 | 1/L5/3846:3854 | No text annotation | homologous HL_8C3A_055 NA | |
HL_7CPU_058 | 1/L5/3863:3875 | No text annotation | homologous HL_8C3A_056 NA | |
HL_7CPU_059 | 1/L5/3903:3911 | No text annotation | homologous HL_8C3A_057 NA | |
HL_7CPU_060 | 1/L5/3923:3930 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
HL_7CPU_061 | 1/L5/3954:3962 | No text annotation | homologous HL_8C3A_059 NA | |
HL_7CPU_062 | 1/L5/3974:3979 | GNRA | homologous HL_8C3A_060 NA | |
HL_7CPU_063 | 1/L5/4005:4015 | No text annotation | geometric HL_4V83_139 NA | |
HL_7CPU_064 | 1/L5/4070:4078 | No text annotation | homologous HL_8C3A_062 NA | |
HL_7CPU_065 | 1/L5/4127:4134 | No text annotation | homologous HL_5TBW_062 NA | |
HL_7CPU_066 | 1/L5/4150:4156 | No text annotation | homologous HL_5TBW_063 NA | |
HL_7CPU_067 | 1/L5/4193:4198 | GNRA | homologous HL_8C3A_065 NA | |
HL_7CPU_068 | 1/L5/4256:4261 | GNRA | homologous HL_8C3A_066 NA | |
HL_7CPU_069 | 1/L5/4299:4304 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
HL_7CPU_070 | 1/L5/4341:4355 | No text annotation | homologous HL_8C3A_068 NA | |
HL_7CPU_072 | 1/L5/4553:4560 | Mini UNCG | geometric HL_4TUW_002 HL_12626.1 | |
HL_7CPU_073 | 1/L5/4623:4631 | No text annotation | homologous HL_8C3A_071 NA | |
HL_7CPU_074 | 1/L5/4669:4676 | No text annotation | geometric HL_5TBW_006 NA | |
HL_7CPU_120 | 1/L7/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
HL_7CPU_075 | 1/L7/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
HL_7CPU_076 | 1/L7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
HL_7CPU_077 | 1/L8/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
HL_7CPU_078 | 1/L8/68:90 | No text annotation | ||
HL_7CPU_079 | 1/L8/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
HL_7CPU_080 | 1/L8/122:128 | No text annotation | geometric HL_2ZZM_002 NA | |
HL_7CPU_081 | 1/S2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
HL_7CPU_082 | 1/S2/69:80 | No text annotation | ||
HL_7CPU_083 | 1/S2/156:162 | GNRA related | homologous HL_4V88_188 NA | |
HL_7CPU_084 | 1/S2/289:296 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
HL_7CPU_086 | 1/S2/378:388 | No text annotation | ||
HL_7CPU_087 | 1/S2/417:422 | No text annotation | geometric HL_5U3G_001 NA | |
HL_7CPU_088 | 1/S2/442:453 | No text annotation | homologous HL_4V88_195 NA | |
HL_7CPU_089 | 1/S2/463:468 | UNCG | homologous HL_4V88_196 NA | |
HL_7CPU_090 | 1/S2/499:505 | No text annotation | homologous HL_4V88_197 NA | |
HL_7CPU_091 | 1/S2/536:549 | No text annotation | ||
HL_7CPU_092 | 1/S2/570:582 | No text annotation | geometric HL_4V88_199 NA | |
HL_7CPU_093 | 1/S2/619:624 | GNRA variation | homologous HL_4V88_200 NA | |
HL_7CPU_121 | 1/S2/821:829 | No text annotation | homologous HL_8P9A_206 HL_11974.1 | |
HL_7CPU_098 | 1/S2/958:967 | No text annotation | homologous HL_4V88_206 NA | |
HL_7CPU_099 | 1/S2/995:1000 | GNRA | homologous HL_4V88_207 NA | |
HL_7CPU_100 | 1/S2/1055:1065 | No text annotation | homologous HL_4V88_208 NA | |
HL_7CPU_101 | 1/S2/1114:1121 | No text annotation | ||
HL_7CPU_102 | 1/S2/1142:1147 | GNRA | homologous HL_4V88_210 NA | |
HL_7CPU_103 | 1/S2/1179:1184 | GNRA | homologous HL_4V88_211 NA | |
HL_7CPU_104 | 1/S2/1246:1255 | No text annotation | homologous HL_4V88_212 NA | |
HL_7CPU_105 | 1/S2/1296:1305 | Anticodon loop related | homologous HL_4V88_213 NA | |
HL_7CPU_106 | 1/S2/1354:1359 | GNRA | homologous HL_4V88_214 NA | |
HL_7CPU_107 | 1/S2/1367:1374 | No text annotation | homologous HL_4V88_215 NA | |
HL_7CPU_108 | 1/S2/1417:1425 | No text annotation | ||
HL_7CPU_109 | 1/S2/1461:1467 | GNRA | homologous HL_4V88_217 NA | |
HL_7CPU_110 | 1/S2/1566:1571 | GNRA | homologous HL_4V88_218 NA | |
HL_7CPU_111 | 1/S2/1615:1626 | No text annotation | homologous HL_4V88_219 NA | |
HL_7CPU_112 | 1/S2/1659:1667 | No text annotation | homologous HL_4V88_220 NA | |
HL_7CPU_114 | 1/S2/1848:1853 | GNRA variation | homologous HL_4V88_222 NA | |
HL_7CPU_115 | 1/S6/14:22 | No text annotation | homologous HL_3WFS_001 NA | |
HL_7CPU_116 | 1/S6/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 NA | |
HL_7CPU_117 | 1/S6/52:62 | No text annotation | homologous HL_4V7M_040 HL_50951.1 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7CPU_012 | No text annotation | ||
HL_7CPU_013 | No text annotation | ||
HL_7CPU_016 | No text annotation | ||
HL_7CPU_029 | No text annotation | ||
HL_7CPU_047 | No text annotation | ||
HL_7CPU_055 | No text annotation | ||
HL_7CPU_056 | No text annotation | ||
HL_7CPU_071 | No text annotation | ||
HL_7CPU_085 | No text annotation | ||
HL_7CPU_094 | No text annotation | ||
HL_7CPU_095 | No text annotation | ||
HL_7CPU_096 | No text annotation | ||
HL_7CPU_097 | No text annotation | ||
HL_7CPU_113 | Mini UNCG |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_7CPU_001 | 1/L5/6:7, 1/L8/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
IL_7CPU_002 | 1/L5/12:14, 1/L8/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
IL_7CPU_003 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
IL_7CPU_004 | 1/L5/26:27, 1/L5/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
IL_7CPU_005 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
IL_7CPU_006 | 1/L5/81:88, 1/L5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
IL_7CPU_007 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
IL_7CPU_008 | 1/L5/125:126, 1/L5/142:144 | Single bulged U | geometric IL_7KVT_002 IL_97561.1 | |
IL_7CPU_009 | 1/L5/168:173, 1/L5/262:266 | No text annotation | ||
IL_7CPU_011 | 1/L5/195:196, 1/L5/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
IL_7CPU_012 | 1/L5/199:201, 1/L5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
IL_7CPU_013 | 1/L5/338:341, 1/L8/32:33 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 NA | |
IL_7CPU_014 | 1/L5/347:349, 1/L8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
IL_7CPU_015 | 1/L5/386:389, 1/L5/400:413 | No text annotation | geometric IL_5TBW_014 NA | |
IL_7CPU_016 | 1/L5/414:420, 1/L8/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
IL_7CPU_017 | 1/L5/442:445, 1/L5/1115:1119 | No text annotation | ||
IL_7CPU_018 | 1/L5/447:449, 1/L5/1112:1113 | Single bulged C | geometric IL_4C7O_003 NA | |
IL_7CPU_019 | 1/L5/458:459, 1/L5/703:705 | Single bulged U | geometric IL_7RQB_080 NA | |
IL_7CPU_020 | 1/L5/461:463, 1/L5/699:701 | Isolated non-canonical cWW pair | geometric IL_4V88_467 NA | |
IL_7CPU_021 | 1/L5/465:471, 1/L5/690:697 | No text annotation | ||
IL_7CPU_022 | 1/L5/488:489, 1/L5/673:677 | No text annotation | ||
IL_7CPU_023 | 1/L5/492:495, 1/L5/667:670 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
IL_7CPU_024 | 1/L5/495:498, 1/L5/664:667 | Tandem non-canonical cWW pairs | geometric IL_1JID_002 IL_15225.1 | |
IL_7CPU_025 | 1/L5/511:513, 1/L5/657:658 | Single bulged A | geometric IL_6WPI_001 IL_14190.1 | |
IL_7CPU_026 | 1/L5/717:718, 1/L5/1101:1103 | Single bulged G | geometric IL_4LFB_036 IL_28408.1 | |
IL_7CPU_027 | 1/L5/731:732, 1/L5/840:843 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
IL_7CPU_028 | 1/L5/735:739, 1/L5/836:837 | No text annotation | ||
IL_7CPU_029 | 1/L5/740:742, 1/L5/828:835 | No text annotation | ||
IL_7CPU_030 | 1/L5/745:747, 1/L5/824:825 | No text annotation | ||
IL_7CPU_031 | 1/L5/748:750, 1/L5/822:823 | No text annotation | ||
IL_7CPU_032 | 1/L5/753:760, 1/L5/811:819 | No text annotation | geometric IL_5TBW_020 NA | |
IL_7CPU_033 | 1/L5/929:930, 1/L5/1067:1069 | Single bulged A | geometric IL_4R4V_003 IL_14190.1 | |
IL_7CPU_035 | 1/L5/938:940, 1/L5/1047:1051 | Isolated near basepair | geometric IL_7A0S_030 IL_42997.4 | |
IL_7CPU_036 | 1/L5/942:943, 1/L5/1043:1045 | Single bulged C | geometric IL_3W3S_001 NA | |
IL_7CPU_037 | 1/L5/949:950, 1/L5/1035:1037 | No text annotation | ||
IL_7CPU_248 | 1/L5/949:953, 1/L5/1031:1037 | Partly complementary | geometric IL_7VYX_004 IL_71154.1 | |
IL_7CPU_038 | 1/L5/950:953, 1/L5/1031:1035 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
IL_7CPU_039 | 1/L5/1005:1007, 1/L5/1019:1022 | No text annotation | geometric IL_4V9F_053 IL_86407.1 | |
IL_7CPU_040 | 1/L5/1172:1175, 1/L5/1194:1197 | No text annotation | ||
IL_7CPU_249 | 1/L5/1172:1176, 1/L5/1191:1197 | No text annotation | ||
IL_7CPU_041 | 1/L5/1175:1176, 1/L5/1191:1194 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.1 | |
IL_7CPU_042 | 1/L5/1239:1243, 1/L5/1269:1274 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
IL_7CPU_043 | 1/L5/1245:1248, 1/L5/1264:1267 | Double sheared | geometric IL_4KZD_002 IL_58355.1 | |
IL_7CPU_044 | 1/L5/1281:1282, 1/L5/1310:1312 | Single bulged A | homologous IL_8C3A_026 NA | |
IL_7CPU_045 | 1/L5/1288:1290, 1/L5/1303:1304 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
IL_7CPU_046 | 1/L5/1293:1294, 1/L5/1298:1300 | Single bulged C | geometric IL_5J7L_311 NA | |
IL_7CPU_047 | 1/L5/1334:1336, 1/L5/1469:1471 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
IL_7CPU_048 | 1/L5/1336:1340, 1/L5/1462:1469 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
IL_7CPU_049 | 1/L5/1359:1360, 1/L5/1426:1428 | Single bulged A | homologous IL_8C3A_031 NA | |
IL_7CPU_050 | 1/L5/1364:1365, 1/L5/1390:1392 | Single bulged G | homologous IL_8C3A_032 NA | |
IL_7CPU_051 | 1/L5/1365:1369, 1/L5/1386:1390 | Triple sheared | homologous IL_8C3A_033 NA | |
IL_7CPU_052 | 1/L5/1400:1403, 1/L5/1419:1421 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
IL_7CPU_053 | 1/L5/1404:1406, 1/L5/1417:1418 | Single bulged U | homologous IL_8C3A_035 NA | |
IL_7CPU_054 | 1/L5/1438:1440, 1/L5/1450:1454 | No text annotation | homologous IL_8C3A_036 NA | |
IL_7CPU_055 | 1/L5/1485:1487, 1/L5/1496:1498 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
IL_7CPU_056 | 1/L5/1500:1502, 1/L5/1651:1654 | No text annotation | ||
IL_7CPU_058 | 1/L5/1526:1528, 1/L5/1641:1642 | Single bulged G | homologous IL_8C3A_040 NA | |
IL_7CPU_059 | 1/L5/1535:1540, 1/L5/1595:1600 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
IL_7CPU_060 | 1/L5/1540:1541, 1/L5/1593:1595 | Minor groove platform | homologous IL_8C3A_042 NA | |
IL_7CPU_061 | 1/L5/1542:1547, 1/L5/1589:1592 | C-loop | homologous IL_5TBW_040 NA | |
IL_7CPU_062 | 1/L5/1549:1552, 1/L5/1584:1587 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
IL_7CPU_063 | 1/L5/1552:1554, 1/L5/1582:1584 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
IL_7CPU_064 | 1/L5/1617:1619, 1/L5/1626:1627 | Single bulged G | homologous IL_8C3A_048 NA | |
IL_7CPU_065 | 1/L5/1661:1663, 1/L5/1677:1679 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
IL_7CPU_067 | 1/L5/1708:1712, 1/L5/1870:1874 | UAA/GAN | homologous IL_8C3A_051 NA | |
IL_7CPU_068 | 1/L5/1714:1721, 1/L5/1867:1868 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
IL_7CPU_069 | 1/L5/1721:1723, 1/L5/1866:1867 | No text annotation | ||
IL_7CPU_070 | 1/L5/1723:1725, 1/L5/1865:1866 | No text annotation | ||
IL_7CPU_071 | 1/L5/1729:1736, 1/L5/1856:1861 | No text annotation | homologous IL_8C3A_054 NA | |
IL_7CPU_072 | 1/L5/1736:1747, 1/L5/1841:1856 | No text annotation | geometric IL_5TBW_052 NA | |
IL_7CPU_073 | 1/L5/1749:1751, 1/L5/1838:1839 | Single bulged U | homologous IL_5TBW_053 NA | |
IL_7CPU_250 | 1/L5/1760:1775, 1/L5/1796:1829 | No text annotation | ||
IL_7CPU_074 | 1/L5/1886:1888, 1/L5/2029:2030 | Single bulged C | geometric IL_4C7O_003 NA | |
IL_7CPU_075 | 1/L5/2047:2049, 1/L5/2099:2102 | No text annotation | homologous IL_8C3A_061 NA | |
IL_7CPU_076 | 1/L5/2056:2058, 1/L5/2091:2092 | Single bulged A | homologous IL_8C3A_062 NA | |
IL_7CPU_077 | 1/L5/2059:2066, 1/L5/2086:2090 | Kink-turn | homologous IL_5TBW_059 NA | |
IL_7CPU_078 | 1/L5/2069:2071, 1/L5/2082:2083 | Single bulged A | homologous IL_5TBW_060 NA | |
IL_7CPU_079 | 1/L5/2115:2121, 1/L5/3515:3520 | No text annotation | homologous IL_8C3A_065 NA | |
IL_7CPU_080 | 1/L5/2172:2176, 1/L5/2184:2186 | C-loop | geometric IL_7A0S_047 IL_06671.1 | |
IL_7CPU_081 | 1/L5/2203:2207, 1/L5/2266:2271 | UAA/GAN | homologous IL_8C3A_067 NA | |
IL_7CPU_082 | 1/L5/2234:2237, 1/L5/2255:2257 | Isolated non-canonical cWW pair | geometric IL_1XJR_003 NA | |
IL_7CPU_083 | 1/L5/2299:2304, 1/L5/2526:2528 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 NA | |
IL_7CPU_084 | 1/L5/2306:2307, 1/L5/2522:2524 | Single bulged U | geometric IL_2A64_002 NA | |
IL_7CPU_085 | 1/L5/2313:2315, 1/L5/2323:2325 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_01003.1 | |
IL_7CPU_086 | 1/L5/2343:2347, 1/L5/2506:2510 | Triple sheared | geometric IL_7RQB_075 NA | |
IL_7CPU_087 | 1/L5/2367:2368, 1/L5/2478:2480 | Single bulged C | homologous IL_8C3A_075 NA | |
IL_7CPU_088 | 1/L5/2368:2369, 1/L5/2476:2478 | Single stack bend | homologous IL_8C3A_076 NA | |
IL_7CPU_089 | 1/L5/2400:2402, 1/L5/2439:2442 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
IL_7CPU_090 | 1/L5/2405:2407, 1/L5/2435:2436 | Single bulged G | geometric IL_5J7L_019 NA | |
IL_7CPU_091 | 1/L5/2410:2416, 1/L5/2426:2432 | Kink-turn | homologous IL_5TBW_073 NA | |
IL_7CPU_092 | 1/L5/2586:2592, 1/L5/3507:3510 | No text annotation | homologous IL_5TBW_074 NA | |
IL_7CPU_093 | 1/L5/2598:2600, 1/L5/3499:3501 | No text annotation | homologous IL_8C3A_081 NA | |
IL_7CPU_094 | 1/L5/2601:2604, 1/L5/3497:3498 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
IL_7CPU_251 | 1/L5/2601:2609, 1/L5/3494:3498 | No text annotation | homologous IL_8C3A_484 NA | |
IL_7CPU_095 | 1/L5/2604:2609, 1/L5/3494:3497 | No text annotation | homologous IL_8C3A_083 NA | |
IL_7CPU_096 | 1/L5/2621:2626, 1/L5/2631:2637 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.1 | |
IL_7CPU_097 | 1/L5/2643:2645, 1/L5/3267:3269 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
IL_7CPU_098 | 1/L5/2650:2651, 1/L5/3259:3262 | No text annotation | homologous IL_8C3A_086 NA | |
IL_7CPU_099 | 1/L5/3289:3290, 1/L5/3484:3486 | Single bulged A | homologous IL_5TBW_082 NA | |
IL_7CPU_100 | 1/L5/3317:3322, 1/L5/3334:3341 | Kink-turn related | homologous IL_5TBW_083 NA | |
IL_7CPU_101 | 1/L5/3357:3360, 1/L5/3406:3407 | Major groove intercalation | homologous IL_5TBW_084 NA | |
IL_7CPU_102 | 1/L5/3361:3362, 1/L5/3402:3405 | Major groove intercalation | homologous IL_5TBW_085 NA | |
IL_7CPU_103 | 1/L5/3365:3367, 1/L5/3398:3399 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
IL_7CPU_252 | 1/L5/3365:3371, 1/L5/3396:3399 | No text annotation | ||
IL_7CPU_104 | 1/L5/3367:3371, 1/L5/3396:3398 | No text annotation | ||
IL_7CPU_105 | 1/L5/3372:3378, 1/L5/3389:3395 | No text annotation | homologous IL_8C3A_093 NA | |
IL_7CPU_106 | 1/L5/3437:3438, 1/L5/3468:3471 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
IL_7CPU_107 | 1/L5/3438:3449, 1/L5/3465:3468 | No text annotation | homologous IL_5TBW_090 NA | |
IL_7CPU_108 | 1/L5/3552:3555, 1/L5/4216:4218 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
IL_7CPU_109 | 1/L5/3557:3559, 1/L5/4211:4214 | No text annotation | homologous IL_8C3A_097 NA | |
IL_7CPU_110 | 1/L5/3570:3572, 1/L5/4041:4042 | Single bulged U | homologous IL_5TBW_093 NA | |
IL_7CPU_111 | 1/L5/3573:3574, 1/L5/4037:4040 | Minor groove platform | homologous IL_5TBW_094 NA | |
IL_7CPU_112 | 1/L5/3584:3586, 1/L5/3834:3837 | No text annotation | homologous IL_8C3A_100 NA | |
IL_7CPU_113 | 1/L5/3733:3739, 1/L5/3814:3817 | No text annotation | homologous IL_8C3A_106 NA | |
IL_7CPU_114 | 1/L5/3742:3780, 1/L5/3808:3811 | No text annotation | ||
IL_7CPU_115 | 1/L5/3844:3845, 1/L5/3855:3857 | Single bulged A | homologous IL_5TBW_098 NA | |
IL_7CPU_116 | 1/L5/3896:3898, 1/L5/3916:3920 | No text annotation | homologous IL_8C3A_108 NA | |
IL_7CPU_117 | 1/L5/3944:3946, 1/L5/3970:3971 | Single bulged A | geometric IL_5WWT_001 IL_14190.1 | |
IL_7CPU_118 | 1/L5/3948:3951, 1/L5/3965:3968 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
IL_7CPU_119 | 1/L5/4000:4003, 1/L5/4017:4018 | Single stack bend | geometric IL_5J7L_032 NA | |
IL_7CPU_120 | 1/L5/4053:4054, 1/L5/4095:4097 | Major groove platform | homologous IL_5TBW_102 NA | |
IL_7CPU_253 | 1/L5/4053:4056, 1/L5/4093:4097 | No text annotation | homologous IL_8C3A_111 NA | |
IL_7CPU_121 | 1/L5/4054:4056, 1/L5/4093:4095 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
IL_7CPU_122 | 1/L5/4056:4058, 1/L5/4092:4093 | Major groove platform | geometric IL_5TBW_104 NA | |
IL_7CPU_123 | 1/L5/4058:4060, 1/L5/4088:4092 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
IL_7CPU_124 | 1/L5/4065:4069, 1/L5/4079:4083 | No text annotation | homologous IL_8C3A_114 NA | |
IL_7CPU_125 | 1/L5/4106:4107, 1/L5/4179:4181 | Major groove platform | homologous IL_8C3A_115 NA | |
IL_7CPU_126 | 1/L5/4109:4111, 1/L5/4173:4177 | No text annotation | homologous IL_8C3A_116 NA | |
IL_7CPU_127 | 1/L5/4111:4112, 1/L5/4170:4173 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
IL_7CPU_128 | 1/L5/4119:4121, 1/L5/4142:4144 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
IL_7CPU_254 | 1/L5/4119:4123, 1/L5/4138:4144 | No text annotation | ||
IL_7CPU_129 | 1/L5/4121:4123, 1/L5/4138:4142 | No text annotation | geometric IL_3DD2_004 NA | |
IL_7CPU_130 | 1/L5/4148:4150, 1/L5/4156:4158 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
IL_7CPU_131 | 1/L5/4190:4191, 1/L5/4200:4202 | Single bulged A | homologous IL_5TBW_113 NA | |
IL_7CPU_132 | 1/L5/4233:4235, 1/L5/4374:4376 | No text annotation | geometric IL_3ICQ_003 NA | |
IL_7CPU_133 | 1/L5/4235:4238, 1/L5/4370:4374 | Double sheared | geometric IL_6E7L_002 NA | |
IL_7CPU_134 | 1/L5/4243:4245, 1/L5/4271:4273 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
IL_7CPU_135 | 1/L5/4249:4256, 1/L5/4261:4267 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
IL_7CPU_136 | 1/L5/4277:4282, 1/L5/4322:4326 | No text annotation | ||
IL_7CPU_137 | 1/L5/4285:4290, 1/L5/4315:4319 | UAA/GAN related | homologous IL_5TBW_118 NA | |
IL_7CPU_138 | 1/L5/4291:4293, 1/L5/4312:4314 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10892.1 | |
IL_7CPU_139 | 1/L5/4294:4295, 1/L5/4308:4311 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
IL_7CPU_140 | 1/L5/4333:4338, 1/L5/4358:4363 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
IL_7CPU_141 | 1/L5/4392:4396, 1/L5/4606:4608 | Isolated cWH basepair | geometric IL_2W2H_002 NA | |
IL_7CPU_142 | 1/L5/4397:4400, 1/L5/4602:4605 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
IL_7CPU_143 | 1/L5/4401:4403, 1/L5/4599:4601 | Isolated non-canonical cWW pair | geometric IL_3BNT_001 IL_71625.1 | |
IL_7CPU_144 | 1/L5/4403:4405, 1/L5/4596:4599 | No text annotation | ||
IL_7CPU_145 | 1/L5/4410:4419, 1/L5/4515:4523 | No text annotation | ||
IL_7CPU_146 | 1/L5/4531:4534, 1/L5/4577:4580 | Tandem non-canonical cWW pairs | geometric IL_4EYA_003 IL_71194.1 | |
IL_7CPU_147 | 1/L5/4537:4542, 1/L5/4570:4574 | No text annotation | ||
IL_7CPU_271 | 1/L5/4545:4550, 1/L5/4563:4567 | No text annotation | ||
IL_7CPU_149 | 1/L5/4620:4623, 1/L5/4631:4634 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
IL_7CPU_150 | 1/L5/4640:4642, 1/L5/4705:4707 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_01003.1 | |
IL_7CPU_151 | 1/L5/4644:4645, 1/L5/4701:4703 | Single bulged U | homologous IL_8C3A_137 NA | |
IL_7CPU_152 | 1/L5/4648:4650, 1/L5/4693:4698 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
IL_7CPU_153 | 1/L5/4651:4657, 1/L5/4687:4692 | No text annotation | ||
IL_7CPU_154 | 1/L5/4660:4662, 1/L5/4683:4684 | Single bulged U | homologous IL_8C3A_140 NA | |
IL_7CPU_155 | 1/L5/4662:4665, 1/L5/4680:4683 | Double sheared | geometric IL_4V9F_100 IL_58355.1 | |
IL_7CPU_156 | 1/L7/15:16, 1/L7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
IL_7CPU_157 | 1/L7/21:27, 1/L7/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
IL_7CPU_158 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
IL_7CPU_159 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
IL_7CPU_160 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_62167.1 | |
IL_7CPU_161 | 1/L7/79:81, 1/L7/95:97 | No text annotation | geometric IL_7RQB_015 NA | |
IL_7CPU_162 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
IL_7CPU_163 | 1/L8/64:66, 1/L8/92:95 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
IL_7CPU_164 | 1/S2/23:25, 1/S2/650:652 | Isolated non-canonical cWW pair | geometric IL_7A0S_020 IL_01003.1 | |
IL_7CPU_165 | 1/S2/34:36, 1/S2/520:522 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
IL_7CPU_166 | 1/S2/37:40, 1/S2/515:519 | Double sheared | geometric IL_4WF9_016 IL_58355.1 | |
IL_7CPU_167 | 1/S2/41:47, 1/S2/480:482 | No text annotation | geometric IL_4V88_387 NA | |
IL_7CPU_168 | 1/S2/49:51, 1/S2/477:478 | Minor groove platform | homologous IL_4V88_388 NA | |
IL_7CPU_169 | 1/S2/57:62, 1/S2/86:88 | No text annotation | homologous IL_4V88_389 NA | |
IL_7CPU_256 | 1/S2/63:68, 1/S2/81:85 | No text annotation | homologous IL_8P9A_379 IL_21667.2 | |
IL_7CPU_171 | 1/S2/108:112, 1/S2/350:354 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_71154.1 | |
IL_7CPU_172 | 1/S2/112:115, 1/S2/349:350 | Multiple bulged bases | geometric IL_4V88_392 NA | |
IL_7CPU_173 | 1/S2/116:121, 1/S2/344:348 | No text annotation | homologous IL_4V88_393 NA | |
IL_7CPU_174 | 1/S2/145:151, 1/S2/167:174 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
IL_7CPU_175 | 1/S2/152:154, 1/S2/164:166 | Isolated non-canonical cWW contact | homologous IL_4V88_395 NA | |
IL_7CPU_257 | 1/S2/152:156, 1/S2/162:166 | No text annotation | ||
IL_7CPU_178 | 1/S2/313:315, 1/S2/337:338 | Single bulged A | homologous IL_4V88_399 NA | |
IL_7CPU_179 | 1/S2/318:320, 1/S2/333:334 | No text annotation | ||
IL_7CPU_180 | 1/S2/360:365, 1/S2/397:404 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
IL_7CPU_181 | 1/S2/367:372, 1/S2/394:395 | No text annotation | geometric IL_5Y58_001 IL_45649.1 | |
IL_7CPU_182 | 1/S2/412:414, 1/S2/425:430 | No text annotation | homologous IL_4V88_404 NA | |
IL_7CPU_183 | 1/S2/438:440, 1/S2/455:457 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
IL_7CPU_184 | 1/S2/460:462, 1/S2/469:471 | Isolated near basepair | homologous IL_4V88_406 NA | |
IL_7CPU_185 | 1/S2/488:490, 1/S2/512:513 | Single bulged U | homologous IL_4V88_407 NA | |
IL_7CPU_186 | 1/S2/492:496, 1/S2/509:510 | C-loop | geometric IL_5J7L_018 NA | |
IL_7CPU_187 | 1/S2/496:497, 1/S2/507:509 | Single bulged G | geometric IL_5J7L_019 NA | |
IL_7CPU_191 | 1/S2/600:607, 1/S2/637:638 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
IL_7CPU_192 | 1/S2/607:609, 1/S2/636:637 | Single bulged U | homologous IL_4V88_414 NA | |
IL_7CPU_193 | 1/S2/612:618, 1/S2/625:633 | Kink-turn related | homologous IL_4V88_415 NA | |
IL_7CPU_194 | 1/S2/664:666, 1/S2/1163:1165 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
IL_7CPU_195 | 1/S2/666:672, 1/S2/1162:1163 | No text annotation | geometric IL_5J7L_026 NA | |
IL_7CPU_196 | 1/S2/674:676, 1/S2/1031:1033 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
IL_7CPU_197 | 1/S2/677:681, 1/S2/1026:1030 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
IL_7CPU_272 | 1/S2/803:804, 1/S2/861:864 | No text annotation | homologous IL_8P9A_412 IL_73108.1 | |
IL_7CPU_199 | 1/S2/806:808, 1/S2/857:859 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
IL_7CPU_200 | 1/S2/808:816, 1/S2/850:857 | No text annotation | homologous IL_4V88_425 NA | |
IL_7CPU_201 | 1/S2/875:877, 1/S2/911:913 | Isolated non-canonical cWW pair | geometric IL_5Y85_006 IL_01003.1 | |
IL_7CPU_202 | 1/S2/878:880, 1/S2/908:910 | Isolated non-canonical cWW pair | geometric IL_4LFB_059 IL_01003.1 | |
IL_7CPU_203 | 1/S2/923:924, 1/S2/1020:1023 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
IL_7CPU_260 | 1/S2/926:927, 1/S2/1016:1018 | Single bulged U | geometric IL_3NDB_005 NA | |
IL_7CPU_205 | 1/S2/929:932, 1/S2/1011:1014 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
IL_7CPU_206 | 1/S2/932:936, 1/S2/1008:1011 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
IL_7CPU_207 | 1/S2/943:946, 1/S2/982:985 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
IL_7CPU_208 | 1/S2/953:957, 1/S2/968:975 | Kink-turn | homologous IL_4V88_434 NA | |
IL_7CPU_209 | 1/S2/1043:1048, 1/S2/1072:1074 | Other IL | geometric IL_4V88_435 NA | |
IL_7CPU_210 | 1/S2/1048:1052, 1/S2/1068:1072 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
IL_7CPU_211 | 1/S2/1092:1094, 1/S2/1153:1159 | No text annotation | homologous IL_4V88_437 NA | |
IL_7CPU_212 | 1/S2/1099:1102, 1/S2/1132:1135 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
IL_7CPU_213 | 1/S2/1102:1104, 1/S2/1130:1132 | Isolated non-canonical cWW pair | geometric IL_4V88_444 NA | |
IL_7CPU_214 | 1/S2/1109:1111, 1/S2/1124:1125 | Minor groove platform | geometric IL_4V88_412 NA | |
IL_7CPU_215 | 1/S2/1169:1176, 1/S2/1187:1192 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
IL_7CPU_216 | 1/S2/1204:1205, 1/S2/1695:1697 | Single bulged A | homologous IL_4V88_441 NA | |
IL_7CPU_217 | 1/S2/1207:1209, 1/S2/1692:1693 | Single bulged G | homologous IL_4V88_442 NA | |
IL_7CPU_218 | 1/S2/1215:1218, 1/S2/1682:1686 | C-loop | homologous IL_4V88_443 NA | |
IL_7CPU_219 | 1/S2/1231:1233, 1/S2/1527:1529 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
IL_7CPU_220 | 1/S2/1236:1237, 1/S2/1522:1524 | Minor groove platform | homologous IL_4V88_445 NA | |
IL_7CPU_221 | 1/S2/1271:1273, 1/S2/1511:1513 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
IL_7CPU_261 | 1/S2/1271:1274, 1/S2/1511:1513 | No text annotation | geometric IL_4N0T_004 IL_32983.1 | |
IL_7CPU_222 | 1/S2/1281:1291, 1/S2/1310:1318 | No text annotation | ||
IL_7CPU_223 | 1/S2/1292:1294, 1/S2/1307:1309 | No text annotation | homologous IL_4V88_448 NA | |
IL_7CPU_224 | 1/S2/1326:1328, 1/S2/1503:1504 | Single bulged U | homologous IL_4V88_449 NA | |
IL_7CPU_225 | 1/S2/1330:1334, 1/S2/1499:1501 | Isolated cWS basepair | homologous IL_4V88_450 NA | |
IL_7CPU_262 | 1/S2/1330:1335, 1/S2/1497:1501 | No text annotation | geometric IL_6CZR_365 NA | |
IL_7CPU_263 | 1/S2/1330:1336, 1/S2/1493:1501 | No text annotation | geometric IL_4V88_510 NA | |
IL_7CPU_264 | 1/S2/1334:1335, 1/S2/1497:1499 | No text annotation | geometric IL_8ZA0_002 IL_28408.1 | |
IL_7CPU_265 | 1/S2/1335:1336, 1/S2/1493:1497 | Minor groove platform | geometric IL_4LFB_045 IL_24264.1 | |
IL_7CPU_227 | 1/S2/1338:1339, 1/S2/1489:1491 | Single bulged A | homologous IL_4V88_452 NA | |
IL_7CPU_266 | 1/S2/1348:1350, 1/S2/1381:1383 | Isolated cWH basepair | homologous IL_8P9A_442 IL_10892.1 | |
IL_7CPU_229 | 1/S2/1364:1366, 1/S2/1375:1376 | Minor groove platform | geometric IL_4V88_454 NA | |
IL_7CPU_230 | 1/S2/1396:1400, 1/S2/1448:1451 | Tandem non-canonical cWW pairs | geometric IL_6JDV_002 IL_15225.1 | |
IL_7CPU_231 | 1/S2/1403:1406, 1/S2/1442:1445 | Minor groove platform | homologous IL_4V88_456 NA | |
IL_7CPU_232 | 1/S2/1413:1414, 1/S2/1428:1430 | Single bulged G | geometric IL_5J7L_019 NA | |
IL_7CPU_233 | 1/S2/1538:1540, 1/S2/1595:1597 | Isolated non-canonical cWW pair | geometric IL_2OE5_001 NA | |
IL_7CPU_269 | 1/S2/1542:1551, 1/S2/1583:1593 | No text annotation | ||
IL_7CPU_234 | 1/S2/1551:1559, 1/S2/1578:1583 | 180 degree turn | geometric IL_5J7L_055 NA | |
IL_7CPU_235 | 1/S2/1605:1611, 1/S2/1630:1636 | No text annotation | homologous IL_8C3A_469 NA | |
IL_7CPU_236 | 1/S2/1701:1703, 1/S2/1834:1837 | No text annotation | geometric IL_4V88_463 NA | |
IL_7CPU_237 | 1/S2/1703:1706, 1/S2/1830:1834 | No text annotation | homologous IL_4V88_464 NA | |
IL_7CPU_238 | 1/S2/1707:1709, 1/S2/1827:1829 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
IL_7CPU_270 | 1/S2/1709:1712, 1/S2/1823:1827 | No text annotation | homologous IL_8CRE_469 IL_28833.1 | |
IL_7CPU_240 | 1/S2/1715:1717, 1/S2/1818:1820 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
IL_7CPU_241 | 1/S2/1718:1721, 1/S2/1814:1817 | Double sheared | geometric IL_4V88_468 NA | |
IL_7CPU_242 | 1/S2/1721:1723, 1/S2/1813:1814 | Single bulged U | homologous IL_4V88_469 NA | |
IL_7CPU_243 | 1/S2/1730:1732, 1/S2/1804:1806 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
IL_7CPU_244 | 1/S2/1734:1737, 1/S2/1799:1802 | Double sheared | homologous IL_4V88_471 NA | |
IL_7CPU_245 | 1/S2/1740:1742, 1/S2/1794:1796 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_01003.1 | |
IL_7CPU_246 | 1/S2/1743:1747, 1/S2/1789:1793 | Triple sheared | homologous IL_4V88_474 NA | |
IL_7CPU_247 | 1/S2/1751:1757, 1/S2/1778:1785 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_7CPU_010 | No text annotation | ||
IL_7CPU_034 | No text annotation | ||
IL_7CPU_057 | No text annotation | ||
IL_7CPU_066 | No text annotation | ||
IL_7CPU_148 | No text annotation | ||
IL_7CPU_255 | No text annotation | ||
IL_7CPU_170 | No text annotation | ||
IL_7CPU_176 | No text annotation | ||
IL_7CPU_177 | No text annotation | ||
IL_7CPU_188 | No text annotation | ||
IL_7CPU_258 | No text annotation | ||
IL_7CPU_189 | Single stack bend | ||
IL_7CPU_190 | No text annotation | ||
IL_7CPU_259 | Tandem non-canonical cWW pairs | ||
IL_7CPU_198 | Major groove minor groove platform with extra cWW | ||
IL_7CPU_204 | Isolated cWH basepair | ||
IL_7CPU_226 | Minor groove platform with extra cWW | ||
IL_7CPU_228 | Tandem non-canonical cWW pairs | ||
IL_7CPU_267 | Isolated non-canonical cWW pair | ||
IL_7CPU_268 | No text annotation | ||
IL_7CPU_239 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_7CPU_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/274:277 | No text annotation | ||
J3_7CPU_033 | 1/L5/196:199, 1/L5/215:228, 1/L5/240:244 | No text annotation | ||
J3_7CPU_034 | 1/L5/350:366, 1/L5/373:378, 1/L8/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
J3_7CPU_002 | 1/L5/379:386, 1/L5/413:414, 1/L8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
J3_7CPU_035 | 1/L5/379:389, 1/L5/400:414, 1/L8/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
J3_7CPU_036 | 1/L5/450:454, 1/L5/709:713, 1/L5/1107:1111 | No text annotation | ||
J3_7CPU_005 | 1/L5/1345:1351, 1/L5/1436:1438, 1/L5/1454:1457 | No text annotation | homologous J3_8C3A_003 NA | |
J3_7CPU_006 | 1/L5/1360:1362, 1/L5/1394:1398, 1/L5/1423:1426 | No text annotation | homologous J3_8C3A_004 NA | |
J3_7CPU_007 | 1/L5/1529:1530, 1/L5/1605:1609, 1/L5/1635:1640 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
J3_7CPU_008 | 1/L5/2150:2156, 1/L5/2559:2561, 1/L5/2573:2576 | No text annotation | homologous J3_5TBW_008 NA | |
J3_7CPU_009 | 1/L5/2159:2162, 1/L5/2539:2545, 1/L5/2554:2556 | No text annotation | homologous J3_8C3A_007 NA | |
J3_7CPU_010 | 1/L5/2197:2202, 1/L5/2272:2276, 1/L5/2293:2294 | No text annotation | homologous J3_5TBW_010 NA | |
J3_7CPU_037 | 1/L5/2208:2213, 1/L5/2222:2233, 1/L5/2258:2265 | No text annotation | ||
J3_7CPU_011 | 1/L5/2308:2312, 1/L5/2326:2329, 1/L5/2511:2521 | No text annotation | ||
J3_7CPU_012 | 1/L5/2329:2330, 1/L5/2339:2343, 1/L5/2510:2511 | No text annotation | homologous J3_8C3A_054 NA | |
J3_7CPU_038 | 1/L5/2352:2356, 1/L5/2491:2492, 1/L5/2496:2501 | No text annotation | homologous J3_8C3A_055 NA | |
J3_7CPU_013 | 1/L5/3594:3596, 1/L5/3725:3729, 1/L5/3821:3826 | No text annotation | geometric J3_8VTW_006 NA | |
J3_7CPU_014 | 1/L5/3881:3883, 1/L5/3984:3995, 1/L5/4023:4028 | No text annotation | homologous J3_8C3A_056 NA | |
J3_7CPU_015 | 1/L5/3894:3896, 1/L5/3920:3922, 1/L5/3931:3936 | No text annotation | homologous J3_5TBW_013 NA | |
J3_7CPU_016 | 1/L5/4116:4119, 1/L5/4144:4146, 1/L5/4160:4166 | No text annotation | homologous J3_5TBW_014 NA | |
J3_7CPU_039 | 1/L5/4405:4408, 1/L5/4525:4529, 1/L5/4582:4596 | No text annotation | ||
J3_7CPU_045 | 1/L5/4618:4620, 1/L5/4634:4639, 1/L5/4708:4711 | No text annotation | ||
J3_7CPU_040 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
J3_7CPU_019 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
J3_7CPU_020 | 1/S2/40:41, 1/S2/482:488, 1/S2/513:515 | No text annotation | geometric J3_8C3A_082 NA | |
J3_7CPU_041 | 1/S2/40:47, 1/S2/480:488, 1/S2/513:515 | No text annotation | homologous J3_8C3A_083 NA | |
J3_7CPU_021 | 1/S2/683:686, 1/S2/918:923, 1/S2/1023:1024 | No text annotation | ||
J3_7CPU_042 | 1/S2/683:686, 1/S2/918:924, 1/S2/1020:1024 | No text annotation | ||
J3_7CPU_046 | 1/S2/817:820, 1/S2/830:832, 1/S2/844:849 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
J3_7CPU_023 | 1/S2/939:942, 1/S2/986:994, 1/S2/1001:1005 | No text annotation | homologous J3_4V88_033 NA | |
J3_7CPU_024 | 1/S2/1095:1097, 1/S2/1137:1141, 1/S2/1148:1152 | No text annotation | ||
J3_7CPU_025 | 1/S2/1219:1222, 1/S2/1646:1652, 1/S2/1674:1681 | No text annotation | homologous J3_4V88_035 NA | |
J3_7CPU_026 | 1/S2/1226:1229, 1/S2/1531:1533, 1/S2/1639:1642 | No text annotation | homologous J3_8C3A_039 NA | |
J3_7CPU_027 | 1/S2/1238:1245, 1/S2/1256:1267, 1/S2/1517:1521 | No text annotation | homologous J3_8C3A_040 NA | |
J3_7CPU_043 | 1/S2/1274:1278, 1/S2/1321:1325, 1/S2/1505:1511 | No text annotation | homologous J3_8C3A_041 NA | |
J3_7CPU_029 | 1/S2/1341:1346, 1/S2/1385:1390, 1/S2/1482:1487 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
J3_7CPU_030 | 1/S2/1351:1352, 1/S2/1361:1364, 1/S2/1376:1380 | No text annotation | homologous J3_8C3A_085 NA | |
J3_7CPU_031 | 1/S2/1392:1396, 1/S2/1451:1457, 1/S2/1471:1480 | No text annotation | ||
J3_7CPU_044 | 1/S2/1392:1400, 1/S2/1448:1457, 1/S2/1471:1480 | No text annotation | ||
J3_7CPU_032 | 1/S2/1533:1537, 1/S2/1598:1605, 1/S2/1636:1639 | No text annotation | homologous J3_8C3A_044 NA | |
J4_7CPU_001 | 1/L5/111:112, 1/L5/277:282, 1/L5/303:309, 1/L5/326:329 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
J4_7CPU_002 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
J4_7CPU_003 | 1/L5/2122:2128, 1/L5/2146:2148, 1/L5/2578:2583, 1/L5/3513:3514 | No text annotation | ||
J4_7CPU_004 | 1/L5/2163:2167, 1/L5/2191:2196, 1/L5/2295:2296, 1/L5/2531:2538 | No text annotation | homologous J4_8C3A_004 NA | |
J4_7CPU_005 | 1/L5/2208:2213, 1/L5/2222:2226, 1/L5/2228:2233, 1/L5/2258:2265 | No text annotation | ||
J4_7CPU_006 | 1/L5/2372:2373, 1/L5/2391:2396, 1/L5/2446:2452, 1/L5/2472:2473 | No text annotation | ||
J4_7CPU_007 | 1/L5/3291:3295, 1/L5/3307:3311, 1/L5/3347:3351, 1/L5/3478:3483 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
J4_7CPU_008 | 1/L5/3353:3355, 1/L5/3409:3410, 1/L5/3428:3437, 1/L5/3471:3476 | No text annotation | homologous J4_8P9A_018 J4_42306.1 | |
J4_7CPU_009 | 1/L5/3884:3888, 1/L5/3942:3944, 1/L5/3971:3972, 1/L5/3981:3983 | No text annotation | ||
J4_7CPU_010 | 1/L5/3884:3888, 1/L5/3942:3946, 1/L5/3970:3972, 1/L5/3981:3983 | No text annotation | homologous J4_8C3A_008 NA | |
J4_7CPU_011 | 1/L5/4240:4243, 1/L5/4273:4274, 1/L5/4329:4331, 1/L5/4365:4368 | No text annotation | ||
J4_7CPU_012 | 1/S2/98:106, 1/S2/356:358, 1/S2/406:410, 1/S2/432:433 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
J4_7CPU_013 | 1/S2/672:674, 1/S2/1033:1038, 1/S2/1079:1090, 1/S2/1161:1162 | No text annotation | homologous J4_8C3A_022 NA | |
J4_7CPU_014 | 1/S6/8:11, 1/S6/25:27, 1/S6/43:49, 1/S6/65:66 | tRNA junction | homologous J4_5AXM_001 J4_58311.1 | |
J5_7CPU_008 | 1/L5/20:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:137 | No text annotation | ||
J5_7CPU_002 | 1/L5/1150:1155, 1/L5/1330:1333, 1/L5/1472:1475, 1/L5/2045:2047, 1/L5/2102:2108 | No text annotation | homologous J5_8C3A_002 NA | |
J5_7CPU_003 | 1/L5/2609:2617, 1/L5/2641:2642, 1/L5/3270:3271, 1/L5/3275:3283, 1/L5/3492:3494 | No text annotation | homologous J5_8C3A_004 NA | |
J5_7CPU_004 | 1/L5/3559:3567, 1/L5/4045:4053, 1/L5/4097:4106, 1/L5/4181:4187, 1/L5/4205:4211 | No text annotation | ||
J5_7CPU_005 | 1/L5/3577:3580, 1/L5/3841:3844, 1/L5/3857:3858, 1/L5/3880:3881, 1/L5/4028:4034 | No text annotation | homologous J5_8C3A_006 NA | |
J5_7CPU_006 | 1/S2/30:34, 1/S2/522:528, 1/S2/559:566, 1/S2/586:596, 1/S2/642:645 | No text annotation | ||
J5_7CPU_007 | 1/S2/53:56, 1/S2/89:96, 1/S2/435:437, 1/S2/458:460, 1/S2/471:475 | No text annotation | homologous J5_8C3A_020 NA | |
J6_7CPU_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/331:338, 1/L8/33:35 | No text annotation | ||
J6_7CPU_002 | 1/L5/1167:1170, 1/L5/1199:1203, 1/L5/1210:1214, 1/L5/1232:1235, 1/L5/1278:1280, 1/L5/1313:1318 | No text annotation | ||
J6_7CPU_003 | 1/L5/3577:3580, 1/L5/3841:3844, 1/L5/3857:3858, 1/L5/3880:3883, 1/L5/3984:3995, 1/L5/4023:4034 | No text annotation | ||
J7_7CPU_001 | 1/L5/1480:1485, 1/L5/1498:1499, 1/L5/1655:1658, 1/L5/1682:1687, 1/L5/1698:1702, 1/L5/1880:1881, 1/L5/2035:2040 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_7CPU_003 | No text annotation | ||
J3_7CPU_004 | No text annotation | ||
J3_7CPU_017 | No text annotation | ||
J3_7CPU_018 | No text annotation | ||
J3_7CPU_022 | No text annotation | ||
J3_7CPU_028 | No text annotation | ||
J5_7CPU_001 | No text annotation |
Coloring options: