HL_7CPU_005

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7CPU|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.4458

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7CPU|1|L5|U|204
7CPU|1|L5|C|205
7CPU|1|L5|U|206
7CPU|1|L5|G|207
7CPU|1|L5|A|208
7CPU|1|L5|U|209
7CPU|1|L5|C|210
7CPU|1|L5|G|211

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32