HL_7CPU_012

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUGCGGGGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_012 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1915

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7CPU|1|L5|C|514
7CPU|1|L5|U|515
7CPU|1|L5|G|650
7CPU|1|L5|C|651
7CPU|1|L5|G|652
7CPU|1|L5|G|653
7CPU|1|L5|G|654
7CPU|1|L5|G|655
7CPU|1|L5|G|656

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a