HL_7CPU_025

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUCUUGGGGCCGAAACGAUCUCAAC

Length

25 nucleotides

Bulged bases

7CPU|1|L5|U|1560, 7CPU|1|L5|A|1568, 7CPU|1|L5|A|1569, 7CPU|1|L5|A|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|G|1556
7CPU|1|L5|U|1557
7CPU|1|L5|C|1558
7CPU|1|L5|U|1559
7CPU|1|L5|U|1560
7CPU|1|L5|G|1561
7CPU|1|L5|G|1562
7CPU|1|L5|G|1563
7CPU|1|L5|G|1564
7CPU|1|L5|C|1565
7CPU|1|L5|C|1566
7CPU|1|L5|G|1567
7CPU|1|L5|A|1568
7CPU|1|L5|A|1569
7CPU|1|L5|A|1570
7CPU|1|L5|C|1571
7CPU|1|L5|G|1572
7CPU|1|L5|A|1573
7CPU|1|L5|U|1574
7CPU|1|L5|C|1575
7CPU|1|L5|U|1576
7CPU|1|L5|C|1577
7CPU|1|L5|A|1578
7CPU|1|L5|A|1579
7CPU|1|L5|C|1580

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10

Chain SP

40S ribosomal protein S15