HL_7CPU_032
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7CPU_032 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.1274
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
7CPU|1|L5|A|2133
7CPU|1|L5|C|2134
7CPU|1|L5|G|2135
7CPU|1|L5|A|2136
7CPU|1|L5|G|2137
7CPU|1|L5|A|2138
7CPU|1|L5|A|2139
7CPU|1|L5|C|2140
7CPU|1|L5|U|2141
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LP
- 60S ribosomal protein L17
- Chain LR
- 60S ribosomal protein L19
- Chain Ld
- 60S ribosomal protein L31
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