HL_7CPU_033

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7CPU|1|L5|G|2178, 7CPU|1|L5|U|2182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_033 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.2075

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7CPU|1|L5|A|2177
7CPU|1|L5|G|2178
7CPU|1|L5|C|2179
7CPU|1|L5|A|2180
7CPU|1|L5|G|2181
7CPU|1|L5|U|2182
7CPU|1|L5|U|2183

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ll

60S ribosomal protein L39