HL_7CPU_036

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGAUGGCCUCCGUUG

Length

15 nucleotides

Bulged bases

7CPU|1|L5|A|2241, 7CPU|1|L5|C|2245, 7CPU|1|L5|U|2247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|C|2239
7CPU|1|L5|G|2240
7CPU|1|L5|A|2241
7CPU|1|L5|U|2242
7CPU|1|L5|G|2243
7CPU|1|L5|G|2244
7CPU|1|L5|C|2245
7CPU|1|L5|C|2246
7CPU|1|L5|U|2247
7CPU|1|L5|C|2248
7CPU|1|L5|C|2249
7CPU|1|L5|G|2250
7CPU|1|L5|U|2251
7CPU|1|L5|U|2252
7CPU|1|L5|G|2253

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L23a