HL_7CPU_037

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

7CPU|1|L5|U|2287, 7CPU|1|L5|C|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_037 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.0996

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7CPU|1|L5|G|2280
7CPU|1|L5|U|2281
7CPU|1|L5|U|2282
7CPU|1|L5|C|2283
7CPU|1|L5|A|2284
7CPU|1|L5|G|2285
7CPU|1|L5|A|2286
7CPU|1|L5|U|2287
7CPU|1|L5|C|2288
7CPU|1|L5|C|2289

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34