HL_7CPU_047

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGGUCGGCCGGCGCCUAGC

Length

19 nucleotides

Bulged bases

7CPU|1|L5|G|3242, 7CPU|1|L5|A|3253

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|G|2655
7CPU|1|L5|G|2656
7CPU|1|L5|G|2657
7CPU|1|L5|U|2658
7CPU|1|L5|C|2659
7CPU|1|L5|G|3242
7CPU|1|L5|G|3243
7CPU|1|L5|C|3244
7CPU|1|L5|C|3245
7CPU|1|L5|G|3246
7CPU|1|L5|G|3247
7CPU|1|L5|C|3248
7CPU|1|L5|G|3249
7CPU|1|L5|C|3250
7CPU|1|L5|C|3251
7CPU|1|L5|U|3252
7CPU|1|L5|A|3253
7CPU|1|L5|G|3254
7CPU|1|L5|C|3255

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19