HL_7CPU_054

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7CPU|1|L5|A|3533, 7CPU|1|L5|A|3534, 7CPU|1|L5|C|3535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_054 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0468

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7CPU|1|L5|G|3530
7CPU|1|L5|G|3531
7CPU|1|L5|G|3532
7CPU|1|L5|A|3533
7CPU|1|L5|A|3534
7CPU|1|L5|C|3535
7CPU|1|L5|G|3536
7CPU|1|L5|G|3537
7CPU|1|L5|G|3538
7CPU|1|L5|C|3539

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Le

60S ribosomal protein L32