HL_7CPU_059

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_059 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.206

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7CPU|1|L5|G|3903
7CPU|1|L5|A|3904
7CPU|1|L5|C|3905
7CPU|1|L5|A|3906
7CPU|1|L5|G|3907
7CPU|1|L5|A|3908
7CPU|1|L5|A|3909
7CPU|1|L5|A|3910
7CPU|1|L5|C|3911

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LJ

60S ribosomal protein L11