HL_7CPU_060

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_060 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.0952

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

7CPU|1|L5|C|3923
7CPU|1|L5|A|3924
7CPU|1|L5|G|3925
7CPU|1|L5|A|3926
7CPU|1|L5|A|3927
7CPU|1|L5|G|3928
7CPU|1|L5|G|3929
7CPU|1|L5|G|3930

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain LT

60S ribosomal protein L21

Chain Lo

60S ribosomal protein L36a