HL_7CPU_070

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7CPU|1|L5|G|4347, 7CPU|1|L5|C|4351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_070 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.059

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7CPU|1|L5|C|4341
7CPU|1|L5|U|4342
7CPU|1|L5|G|4343
7CPU|1|L5|A|4344
7CPU|1|L5|A|4345
7CPU|1|L5|C|4346
7CPU|1|L5|G|4347
7CPU|1|L5|C|4348
7CPU|1|L5|C|4349
7CPU|1|L5|U|4350
7CPU|1|L5|C|4351
7CPU|1|L5|U|4352
7CPU|1|L5|A|4353
7CPU|1|L5|A|4354
7CPU|1|L5|G|4355

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40