HL_7CPU_072

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGAAAGGC

Length

8 nucleotides

Bulged bases

7CPU|1|L5|A|4556, 7CPU|1|L5|A|4557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_072 not in the Motif Atlas

Geometric match to HL_4TUW_002

Geometric discrepancy: 0.2655

The information below is about HL_4TUW_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

7CPU|1|L5|G|4553
7CPU|1|L5|G|4554
7CPU|1|L5|A|4555
7CPU|1|L5|A|4556
7CPU|1|L5|A|4557
7CPU|1|L5|G|4558
7CPU|1|L5|G|4559
7CPU|1|L5|C|4560

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a