HL_7CPU_073

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7CPU|1|L5|U|4624

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_073 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1029

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7CPU|1|L5|G|4623
7CPU|1|L5|U|4624
7CPU|1|L5|A|4625
7CPU|1|L5|G|4626
7CPU|1|L5|A|4627
7CPU|1|L5|C|4628
7CPU|1|L5|G|4629
7CPU|1|L5|A|4630
7CPU|1|L5|C|4631

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31