HL_7CPU_094

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UCUCGAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_094 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3966

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7CPU|1|S2|U|748
7CPU|1|S2|C|749
7CPU|1|S2|U|750
7CPU|1|S2|C|751
7CPU|1|S2|G|794
7CPU|1|S2|A|795
7CPU|1|S2|A|796

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SH

40S ribosomal protein S7

Chain SL

40S ribosomal protein S11